miRNA display CGI


Results 1 - 20 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12787 3' -56.1 NC_003387.1 + 46050 1.09 0.000861
Target:  5'- uCGGCAAUCACCUCGAUCGCCGCGUCGg -3'
miRNA:   3'- -GCCGUUAGUGGAGCUAGCGGCGCAGC- -5'
12787 3' -56.1 NC_003387.1 + 44679 0.84 0.053769
Target:  5'- cCGGUGcUCGCCaaagaguucUCGAUCGCCGCGUCGg -3'
miRNA:   3'- -GCCGUuAGUGG---------AGCUAGCGGCGCAGC- -5'
12787 3' -56.1 NC_003387.1 + 9497 0.81 0.087238
Target:  5'- aCGGCAacacguggugcGUCACCUcgcCGAUCGCCGCGUa- -3'
miRNA:   3'- -GCCGU-----------UAGUGGA---GCUAGCGGCGCAgc -5'
12787 3' -56.1 NC_003387.1 + 24167 0.8 0.109158
Target:  5'- aCGGCGAUCgccGCCUCGGUCGCCcaauUGUCGc -3'
miRNA:   3'- -GCCGUUAG---UGGAGCUAGCGGc---GCAGC- -5'
12787 3' -56.1 NC_003387.1 + 32632 0.77 0.164696
Target:  5'- uGGCGAUCACagagCGGUCGCCGuCGUUc -3'
miRNA:   3'- gCCGUUAGUGga--GCUAGCGGC-GCAGc -5'
12787 3' -56.1 NC_003387.1 + 38058 0.77 0.169186
Target:  5'- gGGCGGUgGCUgagCGAgCGCCGCGUCa -3'
miRNA:   3'- gCCGUUAgUGGa--GCUaGCGGCGCAGc -5'
12787 3' -56.1 NC_003387.1 + 37860 0.76 0.188259
Target:  5'- cCGGCGGcUCGCCUCGAcgaugcuugaacUUGaCCGCGUCa -3'
miRNA:   3'- -GCCGUU-AGUGGAGCU------------AGC-GGCGCAGc -5'
12787 3' -56.1 NC_003387.1 + 30194 0.75 0.238169
Target:  5'- gGaGCAGUCGCCgagcCGGUaCGCCGaCGUCGa -3'
miRNA:   3'- gC-CGUUAGUGGa---GCUA-GCGGC-GCAGC- -5'
12787 3' -56.1 NC_003387.1 + 23541 0.74 0.250028
Target:  5'- gGGCcauGUCGauaccguCCUCGAUCGUCGgGUCGg -3'
miRNA:   3'- gCCGu--UAGU-------GGAGCUAGCGGCgCAGC- -5'
12787 3' -56.1 NC_003387.1 + 19936 0.74 0.250666
Target:  5'- aGGCuggCACCUCGAcgUCGggcaaagguaCCGCGUCGa -3'
miRNA:   3'- gCCGuuaGUGGAGCU--AGC----------GGCGCAGC- -5'
12787 3' -56.1 NC_003387.1 + 2449 0.74 0.257115
Target:  5'- aCGGCcuucacGAUCACCUCGGUgCGCa-CGUCGg -3'
miRNA:   3'- -GCCG------UUAGUGGAGCUA-GCGgcGCAGC- -5'
12787 3' -56.1 NC_003387.1 + 684 0.74 0.257115
Target:  5'- cCGGCAGgguacgCaggGCCUUGAUCGCCuCGUCGu -3'
miRNA:   3'- -GCCGUUa-----G---UGGAGCUAGCGGcGCAGC- -5'
12787 3' -56.1 NC_003387.1 + 27299 0.74 0.259732
Target:  5'- uGGCGgcccuugagagccgcGUCGCCgUGAUCGCCGCGauuUCGg -3'
miRNA:   3'- gCCGU---------------UAGUGGaGCUAGCGGCGC---AGC- -5'
12787 3' -56.1 NC_003387.1 + 13652 0.74 0.263034
Target:  5'- uCGGCGG-CGgCUCGGUCGCCGagggcgcCGUCGa -3'
miRNA:   3'- -GCCGUUaGUgGAGCUAGCGGC-------GCAGC- -5'
12787 3' -56.1 NC_003387.1 + 28062 0.73 0.284272
Target:  5'- uGGC--UCGCCUCGuacUCGCugCGCGUCGa -3'
miRNA:   3'- gCCGuuAGUGGAGCu--AGCG--GCGCAGC- -5'
12787 3' -56.1 NC_003387.1 + 26489 0.73 0.287109
Target:  5'- aCGGCGAUCGCCggggCGAcgcugugaaugaagCGCCGCacGUCGu -3'
miRNA:   3'- -GCCGUUAGUGGa---GCUa-------------GCGGCG--CAGC- -5'
12787 3' -56.1 NC_003387.1 + 50265 0.73 0.29868
Target:  5'- gGGCGGUgCACCUCGGccUgGCgCGCGUCc -3'
miRNA:   3'- gCCGUUA-GUGGAGCU--AgCG-GCGCAGc -5'
12787 3' -56.1 NC_003387.1 + 34504 0.73 0.29868
Target:  5'- gGGCGaccagGUCGCC--GGUCGUCGCGUCGc -3'
miRNA:   3'- gCCGU-----UAGUGGagCUAGCGGCGCAGC- -5'
12787 3' -56.1 NC_003387.1 + 19605 0.73 0.29868
Target:  5'- uGGCAGUCGuuCCUUGA-CGCCGCGa-- -3'
miRNA:   3'- gCCGUUAGU--GGAGCUaGCGGCGCagc -5'
12787 3' -56.1 NC_003387.1 + 44775 0.73 0.306094
Target:  5'- gCGGCGccGUCuugauuucgGCCUUGAUCGCCGCacUCGa -3'
miRNA:   3'- -GCCGU--UAG---------UGGAGCUAGCGGCGc-AGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.