miRNA display CGI


Results 1 - 20 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12787 3' -56.1 NC_003387.1 + 684 0.74 0.257115
Target:  5'- cCGGCAGgguacgCaggGCCUUGAUCGCCuCGUCGu -3'
miRNA:   3'- -GCCGUUa-----G---UGGAGCUAGCGGcGCAGC- -5'
12787 3' -56.1 NC_003387.1 + 1287 0.69 0.492943
Target:  5'- aCGGUGAUgCGCCUCGA-CGCCcugGCGggCGa -3'
miRNA:   3'- -GCCGUUA-GUGGAGCUaGCGG---CGCa-GC- -5'
12787 3' -56.1 NC_003387.1 + 1525 0.66 0.674251
Target:  5'- aGGCucagCACCUCGGugccgaggaUCGCCagGCGUaCGu -3'
miRNA:   3'- gCCGuua-GUGGAGCU---------AGCGG--CGCA-GC- -5'
12787 3' -56.1 NC_003387.1 + 1698 0.67 0.641774
Target:  5'- gCGGCGGUCGaCUgGAUCGCUgaGCGggcCGg -3'
miRNA:   3'- -GCCGUUAGUgGAgCUAGCGG--CGCa--GC- -5'
12787 3' -56.1 NC_003387.1 + 2449 0.74 0.257115
Target:  5'- aCGGCcuucacGAUCACCUCGGUgCGCa-CGUCGg -3'
miRNA:   3'- -GCCG------UUAGUGGAGCUA-GCGgcGCAGC- -5'
12787 3' -56.1 NC_003387.1 + 2547 0.67 0.640688
Target:  5'- -cGCGGUCGCCgCGGcagauccUCGCCGUGUaCGc -3'
miRNA:   3'- gcCGUUAGUGGaGCU-------AGCGGCGCA-GC- -5'
12787 3' -56.1 NC_003387.1 + 3439 0.69 0.510355
Target:  5'- uCGGCGAgCACCUgggcgaccuucacgCGGUCGaugCGCGUCa -3'
miRNA:   3'- -GCCGUUaGUGGA--------------GCUAGCg--GCGCAGc -5'
12787 3' -56.1 NC_003387.1 + 3940 0.67 0.630917
Target:  5'- gCGGCGAUCAgCggCGAgcUgGCUGCGcCGa -3'
miRNA:   3'- -GCCGUUAGUgGa-GCU--AgCGGCGCaGC- -5'
12787 3' -56.1 NC_003387.1 + 4053 0.67 0.609218
Target:  5'- gGuGCGAUaCGCCUCGGUCaCgGCGUgCGg -3'
miRNA:   3'- gC-CGUUA-GUGGAGCUAGcGgCGCA-GC- -5'
12787 3' -56.1 NC_003387.1 + 4510 0.7 0.424418
Target:  5'- uCGuGCgGGUCACCUCGGcCGCCGcCGcCGg -3'
miRNA:   3'- -GC-CG-UUAGUGGAGCUaGCGGC-GCaGC- -5'
12787 3' -56.1 NC_003387.1 + 6719 0.7 0.472816
Target:  5'- gGGCAGuUCACCgUCGAcUCGCCcCGcUCGa -3'
miRNA:   3'- gCCGUU-AGUGG-AGCU-AGCGGcGC-AGC- -5'
12787 3' -56.1 NC_003387.1 + 6839 0.67 0.652621
Target:  5'- aGGuCGAUCGCC-CGcUCgGCCGCGgcgCGc -3'
miRNA:   3'- gCC-GUUAGUGGaGCuAG-CGGCGCa--GC- -5'
12787 3' -56.1 NC_003387.1 + 7474 0.67 0.652621
Target:  5'- aGGCGAUCACCga----GCCGCG-Ca -3'
miRNA:   3'- gCCGUUAGUGGagcuagCGGCGCaGc -5'
12787 3' -56.1 NC_003387.1 + 7575 0.68 0.555452
Target:  5'- -cGCGAcCACCUcCGAgCGCCGCGccUCGa -3'
miRNA:   3'- gcCGUUaGUGGA-GCUaGCGGCGC--AGC- -5'
12787 3' -56.1 NC_003387.1 + 7606 0.69 0.492943
Target:  5'- -uGC-GUCACCUCGuacacCGCgGCGUCGa -3'
miRNA:   3'- gcCGuUAGUGGAGCua---GCGgCGCAGC- -5'
12787 3' -56.1 NC_003387.1 + 8265 0.68 0.534307
Target:  5'- gGGCGugcagCGCCUCGcgcagCGCCucgugcGCGUCGg -3'
miRNA:   3'- gCCGUua---GUGGAGCua---GCGG------CGCAGC- -5'
12787 3' -56.1 NC_003387.1 + 8333 0.71 0.379104
Target:  5'- gCGGCGAgcuUCGCCUCG-UCGaccaCCGgGUCGu -3'
miRNA:   3'- -GCCGUU---AGUGGAGCuAGC----GGCgCAGC- -5'
12787 3' -56.1 NC_003387.1 + 9497 0.81 0.087238
Target:  5'- aCGGCAacacguggugcGUCACCUcgcCGAUCGCCGCGUa- -3'
miRNA:   3'- -GCCGU-----------UAGUGGA---GCUAGCGGCGCAgc -5'
12787 3' -56.1 NC_003387.1 + 9880 0.66 0.685013
Target:  5'- -uGCAcg-ACCUCGAUCGCCGCcaugaUCGc -3'
miRNA:   3'- gcCGUuagUGGAGCUAGCGGCGc----AGC- -5'
12787 3' -56.1 NC_003387.1 + 10252 0.71 0.415097
Target:  5'- aCGGCGggAUCGCCcggUUGGUCGCgGCGcacUCGg -3'
miRNA:   3'- -GCCGU--UAGUGG---AGCUAGCGgCGC---AGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.