miRNA display CGI


Results 1 - 20 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12787 3' -56.1 NC_003387.1 + 52261 0.69 0.492943
Target:  5'- gCGcCGGUCGCCgUCGGcCGCCGCGgCGg -3'
miRNA:   3'- -GCcGUUAGUGG-AGCUaGCGGCGCaGC- -5'
12787 3' -56.1 NC_003387.1 + 52155 0.69 0.523841
Target:  5'- uGGCAAUCuCCaacagcCGCCGCGUCa -3'
miRNA:   3'- gCCGUUAGuGGagcua-GCGGCGCAGc -5'
12787 3' -56.1 NC_003387.1 + 52042 0.68 0.576833
Target:  5'- uGGCGcgCgACCUCGcuaagCGUCGcCGUCGa -3'
miRNA:   3'- gCCGUuaG-UGGAGCua---GCGGC-GCAGC- -5'
12787 3' -56.1 NC_003387.1 + 51446 0.67 0.620062
Target:  5'- aGGCGcAUCACCgUGAacaccUCGCCGgggucCGUCGg -3'
miRNA:   3'- gCCGU-UAGUGGaGCU-----AGCGGC-----GCAGC- -5'
12787 3' -56.1 NC_003387.1 + 51412 0.73 0.306094
Target:  5'- cCGGCGAgCGCCUgCGG-CGCCGCcUCGa -3'
miRNA:   3'- -GCCGUUaGUGGA-GCUaGCGGCGcAGC- -5'
12787 3' -56.1 NC_003387.1 + 51392 0.66 0.674251
Target:  5'- uCGGCGGaaAUCUCGAcguacccgacgUCGUCGaCGUCGc -3'
miRNA:   3'- -GCCGUUagUGGAGCU-----------AGCGGC-GCAGC- -5'
12787 3' -56.1 NC_003387.1 + 50949 0.69 0.523841
Target:  5'- gGGCuuUCAgCUCGggCGCCaGCGcCGc -3'
miRNA:   3'- gCCGuuAGUgGAGCuaGCGG-CGCaGC- -5'
12787 3' -56.1 NC_003387.1 + 50714 0.68 0.559711
Target:  5'- gGGCGcgcacaaggucgagcGUUACCUCGAcgcCGUCGCGUUu -3'
miRNA:   3'- gCCGU---------------UAGUGGAGCUa--GCGGCGCAGc -5'
12787 3' -56.1 NC_003387.1 + 50421 0.7 0.433863
Target:  5'- gCGGCAgaucGUCGCCUCGGcguaCGCCaGCGagGa -3'
miRNA:   3'- -GCCGU----UAGUGGAGCUa---GCGG-CGCagC- -5'
12787 3' -56.1 NC_003387.1 + 50387 0.66 0.662368
Target:  5'- aCGGCG---GCCUCGAcacCGCCGagcuguaCGUCGg -3'
miRNA:   3'- -GCCGUuagUGGAGCUa--GCGGC-------GCAGC- -5'
12787 3' -56.1 NC_003387.1 + 50265 0.73 0.29868
Target:  5'- gGGCGGUgCACCUCGGccUgGCgCGCGUCc -3'
miRNA:   3'- gCCGUUA-GUGGAGCU--AgCG-GCGCAGc -5'
12787 3' -56.1 NC_003387.1 + 49252 0.68 0.576833
Target:  5'- -aGCGAuuUCACCUCGc-CGCCGCGcagCGa -3'
miRNA:   3'- gcCGUU--AGUGGAGCuaGCGGCGCa--GC- -5'
12787 3' -56.1 NC_003387.1 + 48777 0.7 0.424418
Target:  5'- uCGGCGcagccagcUCGCCgcuGAUCGCCGCGgCGg -3'
miRNA:   3'- -GCCGUu-------AGUGGag-CUAGCGGCGCaGC- -5'
12787 3' -56.1 NC_003387.1 + 48299 0.66 0.695726
Target:  5'- nGGCGAaCGCCUUGcccaGCUcgGCGUCGa -3'
miRNA:   3'- gCCGUUaGUGGAGCuag-CGG--CGCAGC- -5'
12787 3' -56.1 NC_003387.1 + 48268 0.71 0.396838
Target:  5'- uCGGCGGUCGgCUCGGccuUCGgCGCGggcUCGg -3'
miRNA:   3'- -GCCGUUAGUgGAGCU---AGCgGCGC---AGC- -5'
12787 3' -56.1 NC_003387.1 + 48040 0.67 0.652621
Target:  5'- aGGUucagCACCUCGucuugcuUgGCgGCGUCGg -3'
miRNA:   3'- gCCGuua-GUGGAGCu------AgCGgCGCAGC- -5'
12787 3' -56.1 NC_003387.1 + 47183 0.67 0.628746
Target:  5'- uGGUggUCGcCCUCGGggcucagguggcCGCCGgUGUCGg -3'
miRNA:   3'- gCCGuuAGU-GGAGCUa-----------GCGGC-GCAGC- -5'
12787 3' -56.1 NC_003387.1 + 46962 0.66 0.674251
Target:  5'- aGGCGAUCAgCUCG-UCGgCCgagGCGUUc -3'
miRNA:   3'- gCCGUUAGUgGAGCuAGC-GG---CGCAGc -5'
12787 3' -56.1 NC_003387.1 + 46422 0.7 0.424418
Target:  5'- uCGGCG---ACCUCGGUCagcacggccacgGUCGCGUCGu -3'
miRNA:   3'- -GCCGUuagUGGAGCUAG------------CGGCGCAGC- -5'
12787 3' -56.1 NC_003387.1 + 46050 1.09 0.000861
Target:  5'- uCGGCAAUCACCUCGAUCGCCGCGUCGg -3'
miRNA:   3'- -GCCGUUAGUGGAGCUAGCGGCGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.