miRNA display CGI


Results 21 - 40 of 118 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12787 3' -56.1 NC_003387.1 + 10404 0.67 0.598392
Target:  5'- uCGGUGAUCugCUCGucgCGCCacgccuugauCGUCGg -3'
miRNA:   3'- -GCCGUUAGugGAGCua-GCGGc---------GCAGC- -5'
12787 3' -56.1 NC_003387.1 + 10593 0.67 0.62766
Target:  5'- uGGCAaugaggccagcacgGUCGCCUCGGUCaugcaggacgcGaCCGCGgCGg -3'
miRNA:   3'- gCCGU--------------UAGUGGAGCUAG-----------C-GGCGCaGC- -5'
12787 3' -56.1 NC_003387.1 + 10779 0.66 0.706379
Target:  5'- gCGGCcugCAUCgUCgGGUCGUCGgCGUCGg -3'
miRNA:   3'- -GCCGuuaGUGG-AG-CUAGCGGC-GCAGC- -5'
12787 3' -56.1 NC_003387.1 + 11239 0.66 0.706379
Target:  5'- aCGGCAugaaaaagGUCAUugaCUUuuUCgGCCGCGUCGg -3'
miRNA:   3'- -GCCGU--------UAGUG---GAGcuAG-CGGCGCAGC- -5'
12787 3' -56.1 NC_003387.1 + 11326 0.73 0.313647
Target:  5'- uCGuGCug-CGCCUCGGUCGCCcgGCGcUCGg -3'
miRNA:   3'- -GC-CGuuaGUGGAGCUAGCGG--CGC-AGC- -5'
12787 3' -56.1 NC_003387.1 + 11388 0.68 0.534307
Target:  5'- gCGGCGAUCggcGCCaCGcUgGCCGCGaUCGg -3'
miRNA:   3'- -GCCGUUAG---UGGaGCuAgCGGCGC-AGC- -5'
12787 3' -56.1 NC_003387.1 + 11503 0.67 0.640688
Target:  5'- gGGCGGU-GCCUaCGAUCGUcggccugCGUGUCGc -3'
miRNA:   3'- gCCGUUAgUGGA-GCUAGCG-------GCGCAGC- -5'
12787 3' -56.1 NC_003387.1 + 11679 0.67 0.598392
Target:  5'- uCGGCGAUCGCgUgGGUgucaaUGUCGcCGUCGa -3'
miRNA:   3'- -GCCGUUAGUGgAgCUA-----GCGGC-GCAGC- -5'
12787 3' -56.1 NC_003387.1 + 11682 0.68 0.566116
Target:  5'- gGGCugauuAUCGCCgCGGUCGUCGgGcUCGc -3'
miRNA:   3'- gCCGu----UAGUGGaGCUAGCGGCgC-AGC- -5'
12787 3' -56.1 NC_003387.1 + 11830 0.67 0.609218
Target:  5'- -cGCGAUCgcgGCCUUGAuuaggUCGCCGCGg-- -3'
miRNA:   3'- gcCGUUAG---UGGAGCU-----AGCGGCGCagc -5'
12787 3' -56.1 NC_003387.1 + 11960 0.66 0.66345
Target:  5'- aGGCg--CACCUCGGUguaucgacgccCGCCuuGUCGa -3'
miRNA:   3'- gCCGuuaGUGGAGCUA-----------GCGGcgCAGC- -5'
12787 3' -56.1 NC_003387.1 + 12093 0.66 0.66345
Target:  5'- cCGGCAagAUCACCUCG---GCCGCu--- -3'
miRNA:   3'- -GCCGU--UAGUGGAGCuagCGGCGcagc -5'
12787 3' -56.1 NC_003387.1 + 12183 0.66 0.695726
Target:  5'- uCGGgGGUCAcgcCCUCGGgcaggUCGCUGC-UCGg -3'
miRNA:   3'- -GCCgUUAGU---GGAGCU-----AGCGGCGcAGC- -5'
12787 3' -56.1 NC_003387.1 + 12228 0.67 0.598392
Target:  5'- cCGGCGGUCGCCagCGca-GCgGCGcUCGg -3'
miRNA:   3'- -GCCGUUAGUGGa-GCuagCGgCGC-AGC- -5'
12787 3' -56.1 NC_003387.1 + 12402 0.68 0.566116
Target:  5'- aGGCGAUCAaCUcCGGUgCGCCGCuGUgGg -3'
miRNA:   3'- gCCGUUAGUgGA-GCUA-GCGGCG-CAgC- -5'
12787 3' -56.1 NC_003387.1 + 12425 0.67 0.609218
Target:  5'- gCGGCGcuugccgucGUCGuCCUCGAUCGagGgGUCGc -3'
miRNA:   3'- -GCCGU---------UAGU-GGAGCUAGCggCgCAGC- -5'
12787 3' -56.1 NC_003387.1 + 12976 0.66 0.705317
Target:  5'- uCGGCGAgcugguCgUCGAUaaucucgCGCUGCGUCGu -3'
miRNA:   3'- -GCCGUUagu---GgAGCUA-------GCGGCGCAGC- -5'
12787 3' -56.1 NC_003387.1 + 13304 0.69 0.523841
Target:  5'- gCGGCGcccgGUCACCUCGAcccacUCG-CGCGcCa -3'
miRNA:   3'- -GCCGU----UAGUGGAGCU-----AGCgGCGCaGc -5'
12787 3' -56.1 NC_003387.1 + 13401 0.66 0.674251
Target:  5'- gCGGUGAUCACagcaCGcccUCGCCGuUGUCGg -3'
miRNA:   3'- -GCCGUUAGUGga--GCu--AGCGGC-GCAGC- -5'
12787 3' -56.1 NC_003387.1 + 13502 0.67 0.630917
Target:  5'- cCGGCGGguUCGCCggUGGagUCGCUgacaGCGUCGg -3'
miRNA:   3'- -GCCGUU--AGUGGa-GCU--AGCGG----CGCAGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.