Results 21 - 40 of 118 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12787 | 3' | -56.1 | NC_003387.1 | + | 50714 | 0.68 | 0.559711 |
Target: 5'- gGGCGcgcacaaggucgagcGUUACCUCGAcgcCGUCGCGUUu -3' miRNA: 3'- gCCGU---------------UAGUGGAGCUa--GCGGCGCAGc -5' |
|||||||
12787 | 3' | -56.1 | NC_003387.1 | + | 11388 | 0.68 | 0.534307 |
Target: 5'- gCGGCGAUCggcGCCaCGcUgGCCGCGaUCGg -3' miRNA: 3'- -GCCGUUAG---UGGaGCuAgCGGCGC-AGC- -5' |
|||||||
12787 | 3' | -56.1 | NC_003387.1 | + | 30238 | 0.72 | 0.33715 |
Target: 5'- aGGCcGUCGCC-CGGUacgaCGCCGCGgUCGu -3' miRNA: 3'- gCCGuUAGUGGaGCUA----GCGGCGC-AGC- -5' |
|||||||
12787 | 3' | -56.1 | NC_003387.1 | + | 30194 | 0.75 | 0.238169 |
Target: 5'- gGaGCAGUCGCCgagcCGGUaCGCCGaCGUCGa -3' miRNA: 3'- gC-CGUUAGUGGa---GCUA-GCGGC-GCAGC- -5' |
|||||||
12787 | 3' | -56.1 | NC_003387.1 | + | 2547 | 0.67 | 0.640688 |
Target: 5'- -cGCGGUCGCCgCGGcagauccUCGCCGUGUaCGc -3' miRNA: 3'- gcCGUUAGUGGaGCU-------AGCGGCGCA-GC- -5' |
|||||||
12787 | 3' | -56.1 | NC_003387.1 | + | 19529 | 0.67 | 0.609218 |
Target: 5'- gGGCAAcUCGCUgcugcCGAUCGCgCuCGUCGa -3' miRNA: 3'- gCCGUU-AGUGGa----GCUAGCG-GcGCAGC- -5' |
|||||||
12787 | 3' | -56.1 | NC_003387.1 | + | 34249 | 0.69 | 0.492943 |
Target: 5'- gGGCGcUCgACCggcUGAUCGCCGaGUCGg -3' miRNA: 3'- gCCGUuAG-UGGa--GCUAGCGGCgCAGC- -5' |
|||||||
12787 | 3' | -56.1 | NC_003387.1 | + | 37860 | 0.76 | 0.188259 |
Target: 5'- cCGGCGGcUCGCCUCGAcgaugcuugaacUUGaCCGCGUCa -3' miRNA: 3'- -GCCGUU-AGUGGAGCU------------AGC-GGCGCAGc -5' |
|||||||
12787 | 3' | -56.1 | NC_003387.1 | + | 4053 | 0.67 | 0.609218 |
Target: 5'- gGuGCGAUaCGCCUCGGUCaCgGCGUgCGg -3' miRNA: 3'- gC-CGUUA-GUGGAGCUAGcGgCGCA-GC- -5' |
|||||||
12787 | 3' | -56.1 | NC_003387.1 | + | 38058 | 0.77 | 0.169186 |
Target: 5'- gGGCGGUgGCUgagCGAgCGCCGCGUCa -3' miRNA: 3'- gCCGUUAgUGGa--GCUaGCGGCGCAGc -5' |
|||||||
12787 | 3' | -56.1 | NC_003387.1 | + | 33468 | 0.69 | 0.523841 |
Target: 5'- gCGGCcgaAGUCGCCgaggCGGUCGgcgcCCGCGaUCGc -3' miRNA: 3'- -GCCG---UUAGUGGa---GCUAGC----GGCGC-AGC- -5' |
|||||||
12787 | 3' | -56.1 | NC_003387.1 | + | 12402 | 0.68 | 0.566116 |
Target: 5'- aGGCGAUCAaCUcCGGUgCGCCGCuGUgGg -3' miRNA: 3'- gCCGUUAGUgGA-GCUA-GCGGCG-CAgC- -5' |
|||||||
12787 | 3' | -56.1 | NC_003387.1 | + | 50421 | 0.7 | 0.433863 |
Target: 5'- gCGGCAgaucGUCGCCUCGGcguaCGCCaGCGagGa -3' miRNA: 3'- -GCCGU----UAGUGGAGCUa---GCGG-CGCagC- -5' |
|||||||
12787 | 3' | -56.1 | NC_003387.1 | + | 28566 | 0.71 | 0.37649 |
Target: 5'- gCGGCGAUCGCCgUCGAcgacgcccucaagcUcaacacCGCCGCGUaCGg -3' miRNA: 3'- -GCCGUUAGUGG-AGCU--------------A------GCGGCGCA-GC- -5' |
|||||||
12787 | 3' | -56.1 | NC_003387.1 | + | 28062 | 0.73 | 0.284272 |
Target: 5'- uGGC--UCGCCUCGuacUCGCugCGCGUCGa -3' miRNA: 3'- gCCGuuAGUGGAGCu--AGCG--GCGCAGC- -5' |
|||||||
12787 | 3' | -56.1 | NC_003387.1 | + | 19936 | 0.74 | 0.250666 |
Target: 5'- aGGCuggCACCUCGAcgUCGggcaaagguaCCGCGUCGa -3' miRNA: 3'- gCCGuuaGUGGAGCU--AGC----------GGCGCAGC- -5' |
|||||||
12787 | 3' | -56.1 | NC_003387.1 | + | 20976 | 0.67 | 0.652621 |
Target: 5'- gGGCAA-CGCCgCGAaUGCCGCGa-- -3' miRNA: 3'- gCCGUUaGUGGaGCUaGCGGCGCagc -5' |
|||||||
12787 | 3' | -56.1 | NC_003387.1 | + | 1698 | 0.67 | 0.641774 |
Target: 5'- gCGGCGGUCGaCUgGAUCGCUgaGCGggcCGg -3' miRNA: 3'- -GCCGUUAGUgGAgCUAGCGG--CGCa--GC- -5' |
|||||||
12787 | 3' | -56.1 | NC_003387.1 | + | 23834 | 0.67 | 0.630917 |
Target: 5'- cCGGCGcccgCGCCUaagcCGCCGCaGUCGg -3' miRNA: 3'- -GCCGUua--GUGGAgcuaGCGGCG-CAGC- -5' |
|||||||
12787 | 3' | -56.1 | NC_003387.1 | + | 10593 | 0.67 | 0.62766 |
Target: 5'- uGGCAaugaggccagcacgGUCGCCUCGGUCaugcaggacgcGaCCGCGgCGg -3' miRNA: 3'- gCCGU--------------UAGUGGAGCUAG-----------C-GGCGCaGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home