Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12788 | 3' | -57 | NC_003387.1 | + | 45606 | 1.07 | 0.000834 |
Target: 5'- gACGAGAUCCGUUGCCUCGGCGAGCAGc -3' miRNA: 3'- -UGCUCUAGGCAACGGAGCCGCUCGUC- -5' |
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12788 | 3' | -57 | NC_003387.1 | + | 51470 | 0.75 | 0.193823 |
Target: 5'- cCGGGGUCCGUcgGCUUCGGUGgcguaccggccAGCAGg -3' miRNA: 3'- uGCUCUAGGCAa-CGGAGCCGC-----------UCGUC- -5' |
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12788 | 3' | -57 | NC_003387.1 | + | 48142 | 0.74 | 0.227002 |
Target: 5'- uCGAGcu-UGUcgGCCUCGGCGAGCAGc -3' miRNA: 3'- uGCUCuagGCAa-CGGAGCCGCUCGUC- -5' |
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12788 | 3' | -57 | NC_003387.1 | + | 39249 | 0.72 | 0.271654 |
Target: 5'- gGCGAGG-CCGUcgaguucGaCCUCGGCGAGCuGg -3' miRNA: 3'- -UGCUCUaGGCAa------C-GGAGCCGCUCGuC- -5' |
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12788 | 3' | -57 | NC_003387.1 | + | 17077 | 0.71 | 0.320752 |
Target: 5'- uCGAGGUcggccagugcccgcCCGgccGCCUCGGCGGGCu- -3' miRNA: 3'- uGCUCUA--------------GGCaa-CGGAGCCGCUCGuc -5' |
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12788 | 3' | -57 | NC_003387.1 | + | 7956 | 0.7 | 0.372713 |
Target: 5'- uCGAGGUCgGgccGCUUcaCGGCGGGCGGg -3' miRNA: 3'- uGCUCUAGgCaa-CGGA--GCCGCUCGUC- -5' |
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12788 | 3' | -57 | NC_003387.1 | + | 19245 | 0.7 | 0.390363 |
Target: 5'- cGCGGGcgCCGaccGCCUCGGCGAcuuCGGc -3' miRNA: 3'- -UGCUCuaGGCaa-CGGAGCCGCUc--GUC- -5' |
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12788 | 3' | -57 | NC_003387.1 | + | 43784 | 0.7 | 0.39939 |
Target: 5'- uGCGGGcgCCGUgcaucgcggugGCCUCGGacguGAGCAc -3' miRNA: 3'- -UGCUCuaGGCAa----------CGGAGCCg---CUCGUc -5' |
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12788 | 3' | -57 | NC_003387.1 | + | 49808 | 0.69 | 0.40855 |
Target: 5'- gACGAGAgccucgcCCGcgGCCUgccgcgccCGGCGAGCGa -3' miRNA: 3'- -UGCUCUa------GGCaaCGGA--------GCCGCUCGUc -5' |
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12788 | 3' | -57 | NC_003387.1 | + | 3416 | 0.69 | 0.446463 |
Target: 5'- uCGGGG-CCG-UGCCcucggcgugcUCGGCGAGCAc -3' miRNA: 3'- uGCUCUaGGCaACGG----------AGCCGCUCGUc -5' |
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12788 | 3' | -57 | NC_003387.1 | + | 18197 | 0.69 | 0.446463 |
Target: 5'- uGCGAGGUgC---GCCUCGGCGAcGCGa -3' miRNA: 3'- -UGCUCUAgGcaaCGGAGCCGCU-CGUc -5' |
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12788 | 3' | -57 | NC_003387.1 | + | 18212 | 0.69 | 0.446463 |
Target: 5'- cCGAgGAUCgCGgcGCCgcagCGGCGGGCGu -3' miRNA: 3'- uGCU-CUAG-GCaaCGGa---GCCGCUCGUc -5' |
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12788 | 3' | -57 | NC_003387.1 | + | 31158 | 0.68 | 0.456244 |
Target: 5'- uGCaGGAUCagcucgGUUGCCUCGGUgccGGGCGGc -3' miRNA: 3'- -UGcUCUAGg-----CAACGGAGCCG---CUCGUC- -5' |
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12788 | 3' | -57 | NC_003387.1 | + | 52549 | 0.68 | 0.46614 |
Target: 5'- uCGAGcaCCGUcuUGCCgUCGGCcAGCAGg -3' miRNA: 3'- uGCUCuaGGCA--ACGG-AGCCGcUCGUC- -5' |
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12788 | 3' | -57 | NC_003387.1 | + | 24273 | 0.68 | 0.476146 |
Target: 5'- cGCGAucugCCGccGCCUCGGCGuGCGc -3' miRNA: 3'- -UGCUcua-GGCaaCGGAGCCGCuCGUc -5' |
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12788 | 3' | -57 | NC_003387.1 | + | 47293 | 0.68 | 0.496469 |
Target: 5'- gGCGcccucGGUCgaGUUGuCCUCGGCGGGCu- -3' miRNA: 3'- -UGCu----CUAGg-CAAC-GGAGCCGCUCGuc -5' |
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12788 | 3' | -57 | NC_003387.1 | + | 3367 | 0.68 | 0.506777 |
Target: 5'- gACGGcAUCaccaaGcugGCCUCGGCGGGCAu -3' miRNA: 3'- -UGCUcUAGg----Caa-CGGAGCCGCUCGUc -5' |
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12788 | 3' | -57 | NC_003387.1 | + | 5953 | 0.67 | 0.527656 |
Target: 5'- cGCGAGGaCCGa--CCUCGGCGGGagaaAGg -3' miRNA: 3'- -UGCUCUaGGCaacGGAGCCGCUCg---UC- -5' |
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12788 | 3' | -57 | NC_003387.1 | + | 2524 | 0.67 | 0.570298 |
Target: 5'- cGCGGGucgUCGUUGCCguccCGGuCGcGCAGg -3' miRNA: 3'- -UGCUCua-GGCAACGGa---GCC-GCuCGUC- -5' |
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12788 | 3' | -57 | NC_003387.1 | + | 9359 | 0.67 | 0.570298 |
Target: 5'- gGCGAGcuaucUCCGUuucgUGCCgcuccCGGCccgcGAGCAGg -3' miRNA: 3'- -UGCUCu----AGGCA----ACGGa----GCCG----CUCGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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