Results 21 - 28 of 28 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 12788 | 3' | -57 | NC_003387.1 | + | 9359 | 0.67 | 0.570298 |
|
Target: 5'- gGCGAGcuaucUCCGUuucgUGCCgcuccCGGCccgcGAGCAGg -3' miRNA: 3'- -UGCUCu----AGGCA----ACGGa----GCCG----CUCGUC- -5' |
|||||||
| 12788 | 3' | -57 | NC_003387.1 | + | 37125 | 0.66 | 0.581101 |
|
Target: 5'- cGCGAuaauGGUCCGagugUUGCC-CGGC-AGCAGc -3' miRNA: 3'- -UGCU----CUAGGC----AACGGaGCCGcUCGUC- -5' |
|||||||
| 12788 | 3' | -57 | NC_003387.1 | + | 28020 | 0.66 | 0.581101 |
|
Target: 5'- gACGAGcgcggcaagCCGau-CCUCGGCGAGCuGa -3' miRNA: 3'- -UGCUCua-------GGCaacGGAGCCGCUCGuC- -5' |
|||||||
| 12788 | 3' | -57 | NC_003387.1 | + | 2702 | 0.66 | 0.591946 |
|
Target: 5'- gGCGAGGUUg--UG-CUCGGCGAcGCGGg -3' miRNA: 3'- -UGCUCUAGgcaACgGAGCCGCU-CGUC- -5' |
|||||||
| 12788 | 3' | -57 | NC_003387.1 | + | 4690 | 0.66 | 0.602825 |
|
Target: 5'- gACGAGGUgCUGaa-CCUCGuCGAGCAGg -3' miRNA: 3'- -UGCUCUA-GGCaacGGAGCcGCUCGUC- -5' |
|||||||
| 12788 | 3' | -57 | NC_003387.1 | + | 21687 | 0.66 | 0.602825 |
|
Target: 5'- cCGAcGccCUGgccGCCUCGGCGAGCGc -3' miRNA: 3'- uGCU-CuaGGCaa-CGGAGCCGCUCGUc -5' |
|||||||
| 12788 | 3' | -57 | NC_003387.1 | + | 8280 | 0.66 | 0.602825 |
|
Target: 5'- cGCGcAGcgCCucgUGCgCgUCGGCGGGCAGc -3' miRNA: 3'- -UGC-UCuaGGca-ACG-G-AGCCGCUCGUC- -5' |
|||||||
| 12788 | 3' | -57 | NC_003387.1 | + | 48232 | 0.66 | 0.624647 |
|
Target: 5'- aGCGGGGccUCCGcgggcucgGCCUucgCGGCGGGCu- -3' miRNA: 3'- -UGCUCU--AGGCaa------CGGA---GCCGCUCGuc -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home