Results 21 - 28 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12788 | 3' | -57 | NC_003387.1 | + | 43784 | 0.7 | 0.39939 |
Target: 5'- uGCGGGcgCCGUgcaucgcggugGCCUCGGacguGAGCAc -3' miRNA: 3'- -UGCUCuaGGCAa----------CGGAGCCg---CUCGUc -5' |
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12788 | 3' | -57 | NC_003387.1 | + | 45606 | 1.07 | 0.000834 |
Target: 5'- gACGAGAUCCGUUGCCUCGGCGAGCAGc -3' miRNA: 3'- -UGCUCUAGGCAACGGAGCCGCUCGUC- -5' |
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12788 | 3' | -57 | NC_003387.1 | + | 47293 | 0.68 | 0.496469 |
Target: 5'- gGCGcccucGGUCgaGUUGuCCUCGGCGGGCu- -3' miRNA: 3'- -UGCu----CUAGg-CAAC-GGAGCCGCUCGuc -5' |
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12788 | 3' | -57 | NC_003387.1 | + | 48142 | 0.74 | 0.227002 |
Target: 5'- uCGAGcu-UGUcgGCCUCGGCGAGCAGc -3' miRNA: 3'- uGCUCuagGCAa-CGGAGCCGCUCGUC- -5' |
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12788 | 3' | -57 | NC_003387.1 | + | 48232 | 0.66 | 0.624647 |
Target: 5'- aGCGGGGccUCCGcgggcucgGCCUucgCGGCGGGCu- -3' miRNA: 3'- -UGCUCU--AGGCaa------CGGA---GCCGCUCGuc -5' |
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12788 | 3' | -57 | NC_003387.1 | + | 49808 | 0.69 | 0.40855 |
Target: 5'- gACGAGAgccucgcCCGcgGCCUgccgcgccCGGCGAGCGa -3' miRNA: 3'- -UGCUCUa------GGCaaCGGA--------GCCGCUCGUc -5' |
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12788 | 3' | -57 | NC_003387.1 | + | 51470 | 0.75 | 0.193823 |
Target: 5'- cCGGGGUCCGUcgGCUUCGGUGgcguaccggccAGCAGg -3' miRNA: 3'- uGCUCUAGGCAa-CGGAGCCGC-----------UCGUC- -5' |
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12788 | 3' | -57 | NC_003387.1 | + | 52549 | 0.68 | 0.46614 |
Target: 5'- uCGAGcaCCGUcuUGCCgUCGGCcAGCAGg -3' miRNA: 3'- uGCUCuaGGCA--ACGG-AGCCGcUCGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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