miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12789 3' -59 NC_003387.1 + 51248 0.74 0.150278
Target:  5'- aCGUCGacgcccUGGCCCUcgACGaCCUCGACGAGGa -3'
miRNA:   3'- -GCAGU------GCCGGGG--UGC-GGAGCUGCUUU- -5'
12789 3' -59 NC_003387.1 + 51054 0.67 0.465188
Target:  5'- uGUCGguacCGGCCCaCACcuCCUCGACGu-- -3'
miRNA:   3'- gCAGU----GCCGGG-GUGc-GGAGCUGCuuu -5'
12789 3' -59 NC_003387.1 + 50642 0.71 0.2733
Target:  5'- aGUCACGGCCCCcC-CCUCucacACGAAc -3'
miRNA:   3'- gCAGUGCCGGGGuGcGGAGc---UGCUUu -5'
12789 3' -59 NC_003387.1 + 50414 0.68 0.408473
Target:  5'- aCGUCggGCGGCagaUCGuCGCCUCGGCGu-- -3'
miRNA:   3'- -GCAG--UGCCGg--GGU-GCGGAGCUGCuuu -5'
12789 3' -59 NC_003387.1 + 49822 0.73 0.196046
Target:  5'- --cCGCGGCCugCCGCGCC-CGGCGAGc -3'
miRNA:   3'- gcaGUGCCGG--GGUGCGGaGCUGCUUu -5'
12789 3' -59 NC_003387.1 + 49614 0.68 0.408473
Target:  5'- cCGcUgGCGGCCCCGauuuacgaGCCggUCGGCGAGc -3'
miRNA:   3'- -GC-AgUGCCGGGGUg-------CGG--AGCUGCUUu -5'
12789 3' -59 NC_003387.1 + 48299 0.66 0.505183
Target:  5'- aGUUc--GCCgCC-CGCCUCGACGAAAu -3'
miRNA:   3'- gCAGugcCGG-GGuGCGGAGCUGCUUU- -5'
12789 3' -59 NC_003387.1 + 48273 0.66 0.515415
Target:  5'- gGUCGgcuCGGCCUUcgGCGCgggCUCGGCGAAc -3'
miRNA:   3'- gCAGU---GCCGGGG--UGCG---GAGCUGCUUu -5'
12789 3' -59 NC_003387.1 + 48070 0.71 0.247213
Target:  5'- --cCGC-GCCCCgaaGCGCCUCGACGGGu -3'
miRNA:   3'- gcaGUGcCGGGG---UGCGGAGCUGCUUu -5'
12789 3' -59 NC_003387.1 + 44741 0.7 0.287151
Target:  5'- uGUUGCGGCCCC-UGCUccgCGGCGAu- -3'
miRNA:   3'- gCAGUGCCGGGGuGCGGa--GCUGCUuu -5'
12789 3' -59 NC_003387.1 + 44622 0.66 0.52573
Target:  5'- cCGUgGCgcgagcguguGGCCCUggccGCgGCCUCGGCGAu- -3'
miRNA:   3'- -GCAgUG----------CCGGGG----UG-CGGAGCUGCUuu -5'
12789 3' -59 NC_003387.1 + 43305 0.67 0.464209
Target:  5'- gCGUCGuacucguCGG-CCCACuCCUCGGCGAu- -3'
miRNA:   3'- -GCAGU-------GCCgGGGUGcGGAGCUGCUuu -5'
12789 3' -59 NC_003387.1 + 43035 1.06 0.000746
Target:  5'- cCGUCACGGCCCCACGCCUCGACGAAAc -3'
miRNA:   3'- -GCAGUGCCGGGGUGCGGAGCUGCUUU- -5'
12789 3' -59 NC_003387.1 + 41568 0.66 0.495039
Target:  5'- uCGUCACGuuGCCCauagGCGCCUUGAUc--- -3'
miRNA:   3'- -GCAGUGC--CGGGg---UGCGGAGCUGcuuu -5'
12789 3' -59 NC_003387.1 + 40723 0.68 0.390549
Target:  5'- uGUCGaccaGGCCgcgccaCACGuCCUCGAUGAAAu -3'
miRNA:   3'- gCAGUg---CCGGg-----GUGC-GGAGCUGCUUU- -5'
12789 3' -59 NC_003387.1 + 40367 0.68 0.364645
Target:  5'- -aUCGCGGCCggggCCAaggGCCUCGACGu-- -3'
miRNA:   3'- gcAGUGCCGG----GGUg--CGGAGCUGCuuu -5'
12789 3' -59 NC_003387.1 + 39268 0.71 0.247213
Target:  5'- cCGUCGCGGCCCU-UGCC-CGACa--- -3'
miRNA:   3'- -GCAGUGCCGGGGuGCGGaGCUGcuuu -5'
12789 3' -59 NC_003387.1 + 37842 0.67 0.456416
Target:  5'- gGUCG-GGCaCCCcugcgcccggcggcuCGCCUCGACGAu- -3'
miRNA:   3'- gCAGUgCCG-GGGu--------------GCGGAGCUGCUuu -5'
12789 3' -59 NC_003387.1 + 37416 0.67 0.454478
Target:  5'- aCGUCGCGauggcgaccaagaGCCCCAaGCCgcCGACGGu- -3'
miRNA:   3'- -GCAGUGC-------------CGGGGUgCGGa-GCUGCUuu -5'
12789 3' -59 NC_003387.1 + 34837 0.67 0.455446
Target:  5'- uCGUCgACGGCCCgCGCggGCCUUG-CGGu- -3'
miRNA:   3'- -GCAG-UGCCGGG-GUG--CGGAGCuGCUuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.