miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12789 3' -59 NC_003387.1 + 22220 0.68 0.399447
Target:  5'- -cUCGCGGCCCCG-GCCcCGGCa--- -3'
miRNA:   3'- gcAGUGCCGGGGUgCGGaGCUGcuuu -5'
12789 3' -59 NC_003387.1 + 22457 0.66 0.515415
Target:  5'- gCGU--UGGCCUCGCGguaCUCGACGAc- -3'
miRNA:   3'- -GCAguGCCGGGGUGCg--GAGCUGCUuu -5'
12789 3' -59 NC_003387.1 + 22487 0.66 0.495039
Target:  5'- gCGUCguaccgggcgACGGCCUCggcgGCGCgCUCGACGu-- -3'
miRNA:   3'- -GCAG----------UGCCGGGG----UGCG-GAGCUGCuuu -5'
12789 3' -59 NC_003387.1 + 22619 0.66 0.495039
Target:  5'- gGUCACuuGGCggCCCugGCCgcccgcCGACGAc- -3'
miRNA:   3'- gCAGUG--CCG--GGGugCGGa-----GCUGCUuu -5'
12789 3' -59 NC_003387.1 + 23007 0.67 0.425038
Target:  5'- cCGUCGuCGGCCUgggcgccgccgaGCGCCUCGACc--- -3'
miRNA:   3'- -GCAGU-GCCGGGg-----------UGCGGAGCUGcuuu -5'
12789 3' -59 NC_003387.1 + 23134 0.67 0.445816
Target:  5'- aGUCGCccggcuccGGCCCCucgGCCUCGAaguCGAGc -3'
miRNA:   3'- gCAGUG--------CCGGGGug-CGGAGCU---GCUUu -5'
12789 3' -59 NC_003387.1 + 24801 0.68 0.398552
Target:  5'- gGUCGCGGCCgaCCugGCgcagcagCUCGGCGu-- -3'
miRNA:   3'- gCAGUGCCGG--GGugCG-------GAGCUGCuuu -5'
12789 3' -59 NC_003387.1 + 27790 0.66 0.505183
Target:  5'- ---gGCGGCCCCGcCGUCggucgCGGCGGu- -3'
miRNA:   3'- gcagUGCCGGGGU-GCGGa----GCUGCUuu -5'
12789 3' -59 NC_003387.1 + 27909 0.67 0.414867
Target:  5'- --aCGCGGCCUUgaccggcggcguggGCGCCUCGGgGggGg -3'
miRNA:   3'- gcaGUGCCGGGG--------------UGCGGAGCUgCuuU- -5'
12789 3' -59 NC_003387.1 + 27986 0.68 0.36803
Target:  5'- cCGUUGCGGCgCCCucgauuucggcgagcACGCgCUUGGCGAGc -3'
miRNA:   3'- -GCAGUGCCG-GGG---------------UGCG-GAGCUGCUUu -5'
12789 3' -59 NC_003387.1 + 28185 0.68 0.399447
Target:  5'- aGUUucgcuCGGCCCCuCGCCaaggUGGCGGAAc -3'
miRNA:   3'- gCAGu----GCCGGGGuGCGGa---GCUGCUUU- -5'
12789 3' -59 NC_003387.1 + 30286 0.7 0.301549
Target:  5'- aCGcCGCGG-CCCGCGCCUgGgACGAc- -3'
miRNA:   3'- -GCaGUGCCgGGGUGCGGAgC-UGCUuu -5'
12789 3' -59 NC_003387.1 + 30974 0.66 0.484988
Target:  5'- gGUgGCGcugacGCCgaGCGCCUCGGCGAc- -3'
miRNA:   3'- gCAgUGC-----CGGggUGCGGAGCUGCUuu -5'
12789 3' -59 NC_003387.1 + 31423 0.67 0.445816
Target:  5'- gCGcCACuGCUCgACgGCCUCGACGAc- -3'
miRNA:   3'- -GCaGUGcCGGGgUG-CGGAGCUGCUuu -5'
12789 3' -59 NC_003387.1 + 34130 0.66 0.515415
Target:  5'- aCGUCGCGGU---GCGCgaaCUCGACGAGc -3'
miRNA:   3'- -GCAGUGCCGgggUGCG---GAGCUGCUUu -5'
12789 3' -59 NC_003387.1 + 34608 0.72 0.234362
Target:  5'- aCG-UACGGCguccacgcauaauCCUGCGCCUCGACGAu- -3'
miRNA:   3'- -GCaGUGCCG-------------GGGUGCGGAGCUGCUuu -5'
12789 3' -59 NC_003387.1 + 34837 0.67 0.455446
Target:  5'- uCGUCgACGGCCCgCGCggGCCUUG-CGGu- -3'
miRNA:   3'- -GCAG-UGCCGGG-GUG--CGGAGCuGCUuu -5'
12789 3' -59 NC_003387.1 + 37416 0.67 0.454478
Target:  5'- aCGUCGCGauggcgaccaagaGCCCCAaGCCgcCGACGGu- -3'
miRNA:   3'- -GCAGUGC-------------CGGGGUgCGGa-GCUGCUuu -5'
12789 3' -59 NC_003387.1 + 37842 0.67 0.456416
Target:  5'- gGUCG-GGCaCCCcugcgcccggcggcuCGCCUCGACGAu- -3'
miRNA:   3'- gCAGUgCCG-GGGu--------------GCGGAGCUGCUuu -5'
12789 3' -59 NC_003387.1 + 39268 0.71 0.247213
Target:  5'- cCGUCGCGGCCCU-UGCC-CGACa--- -3'
miRNA:   3'- -GCAGUGCCGGGGuGCGGaGCUGcuuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.