miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12789 3' -59 NC_003387.1 + 1284 0.68 0.408473
Target:  5'- -uUCACGGUgaUGCGCCUCGACGc-- -3'
miRNA:   3'- gcAGUGCCGggGUGCGGAGCUGCuuu -5'
12789 3' -59 NC_003387.1 + 22619 0.66 0.495039
Target:  5'- gGUCACuuGGCggCCCugGCCgcccgcCGACGAc- -3'
miRNA:   3'- gCAGUG--CCG--GGGugCGGa-----GCUGCUuu -5'
12789 3' -59 NC_003387.1 + 18174 0.67 0.435355
Target:  5'- aCGUCGacccgcugacgauCGGCUgCgagguGCGCCUCGGCGAc- -3'
miRNA:   3'- -GCAGU-------------GCCGGgG-----UGCGGAGCUGCUuu -5'
12789 3' -59 NC_003387.1 + 49614 0.68 0.408473
Target:  5'- cCGcUgGCGGCCCCGauuuacgaGCCggUCGGCGAGc -3'
miRNA:   3'- -GC-AgUGCCGGGGUg-------CGG--AGCUGCUUu -5'
12789 3' -59 NC_003387.1 + 11340 0.66 0.495039
Target:  5'- gGUCGCccggcgcucGGCCUCACGC-UCGGCGu-- -3'
miRNA:   3'- gCAGUG---------CCGGGGUGCGgAGCUGCuuu -5'
12789 3' -59 NC_003387.1 + 23134 0.67 0.445816
Target:  5'- aGUCGCccggcuccGGCCCCucgGCCUCGAaguCGAGc -3'
miRNA:   3'- gCAGUG--------CCGGGGug-CGGAGCU---GCUUu -5'
12789 3' -59 NC_003387.1 + 22457 0.66 0.515415
Target:  5'- gCGU--UGGCCUCGCGguaCUCGACGAc- -3'
miRNA:   3'- -GCAguGCCGGGGUGCg--GAGCUGCUuu -5'
12789 3' -59 NC_003387.1 + 39268 0.71 0.247213
Target:  5'- cCGUCGCGGCCCU-UGCC-CGACa--- -3'
miRNA:   3'- -GCAGUGCCGGGGuGCGGaGCUGcuuu -5'
12789 3' -59 NC_003387.1 + 7661 0.71 0.253535
Target:  5'- ---gACGGCCCUcgACGCgCUCGGCGAc- -3'
miRNA:   3'- gcagUGCCGGGG--UGCG-GAGCUGCUuu -5'
12789 3' -59 NC_003387.1 + 10684 0.71 0.266578
Target:  5'- gGUCGaucuUGGCgCCCugGCgCUCGGCGAc- -3'
miRNA:   3'- gCAGU----GCCG-GGGugCG-GAGCUGCUuu -5'
12789 3' -59 NC_003387.1 + 31423 0.67 0.445816
Target:  5'- gCGcCACuGCUCgACgGCCUCGACGAc- -3'
miRNA:   3'- -GCaGUGcCGGGgUG-CGGAGCUGCUuu -5'
12789 3' -59 NC_003387.1 + 34837 0.67 0.455446
Target:  5'- uCGUCgACGGCCCgCGCggGCCUUG-CGGu- -3'
miRNA:   3'- -GCAG-UGCCGGG-GUG--CGGAGCuGCUuu -5'
12789 3' -59 NC_003387.1 + 18590 0.67 0.455446
Target:  5'- gCGUCAgGGUCgCC-CGCCUCGGUGGc- -3'
miRNA:   3'- -GCAGUgCCGG-GGuGCGGAGCUGCUuu -5'
12789 3' -59 NC_003387.1 + 22487 0.66 0.495039
Target:  5'- gCGUCguaccgggcgACGGCCUCggcgGCGCgCUCGACGu-- -3'
miRNA:   3'- -GCAG----------UGCCGGGG----UGCG-GAGCUGCuuu -5'
12789 3' -59 NC_003387.1 + 27986 0.68 0.36803
Target:  5'- cCGUUGCGGCgCCCucgauuucggcgagcACGCgCUUGGCGAGc -3'
miRNA:   3'- -GCAGUGCCG-GGG---------------UGCG-GAGCUGCUUu -5'
12789 3' -59 NC_003387.1 + 12351 0.69 0.348048
Target:  5'- aCGUCGaGGCCCUugGCCcCGGCc--- -3'
miRNA:   3'- -GCAGUgCCGGGGugCGGaGCUGcuuu -5'
12789 3' -59 NC_003387.1 + 19240 0.7 0.294281
Target:  5'- gCGaUCGCGGgCgCCGacCGCCUCGGCGAc- -3'
miRNA:   3'- -GC-AGUGCCgG-GGU--GCGGAGCUGCUuu -5'
12789 3' -59 NC_003387.1 + 44741 0.7 0.287151
Target:  5'- uGUUGCGGCCCC-UGCUccgCGGCGAu- -3'
miRNA:   3'- gCAGUGCCGGGGuGCGGa--GCUGCUuu -5'
12789 3' -59 NC_003387.1 + 20449 0.7 0.280157
Target:  5'- -cUCGCGcCCCCACGCCUUGuCGGc- -3'
miRNA:   3'- gcAGUGCcGGGGUGCGGAGCuGCUuu -5'
12789 3' -59 NC_003387.1 + 50642 0.71 0.2733
Target:  5'- aGUCACGGCCCCcC-CCUCucacACGAAc -3'
miRNA:   3'- gCAGUGCCGGGGuGcGGAGc---UGCUUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.