Results 41 - 56 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12789 | 3' | -59 | NC_003387.1 | + | 30286 | 0.7 | 0.301549 |
Target: 5'- aCGcCGCGG-CCCGCGCCUgGgACGAc- -3' miRNA: 3'- -GCaGUGCCgGGGUGCGGAgC-UGCUuu -5' |
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12789 | 3' | -59 | NC_003387.1 | + | 3362 | 0.7 | 0.301549 |
Target: 5'- uCGUCgACGGCaucaCCAagcugGCCUCGGCGGGc -3' miRNA: 3'- -GCAG-UGCCGg---GGUg----CGGAGCUGCUUu -5' |
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12789 | 3' | -59 | NC_003387.1 | + | 19240 | 0.7 | 0.294281 |
Target: 5'- gCGaUCGCGGgCgCCGacCGCCUCGGCGAc- -3' miRNA: 3'- -GC-AGUGCCgG-GGU--GCGGAGCUGCUuu -5' |
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12789 | 3' | -59 | NC_003387.1 | + | 44741 | 0.7 | 0.287151 |
Target: 5'- uGUUGCGGCCCC-UGCUccgCGGCGAu- -3' miRNA: 3'- gCAGUGCCGGGGuGCGGa--GCUGCUuu -5' |
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12789 | 3' | -59 | NC_003387.1 | + | 20449 | 0.7 | 0.280157 |
Target: 5'- -cUCGCGcCCCCACGCCUUGuCGGc- -3' miRNA: 3'- gcAGUGCcGGGGUGCGGAGCuGCUuu -5' |
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12789 | 3' | -59 | NC_003387.1 | + | 8326 | 0.7 | 0.280157 |
Target: 5'- --cUACGGCCCgGcCGaCCUCGACGAc- -3' miRNA: 3'- gcaGUGCCGGGgU-GC-GGAGCUGCUuu -5' |
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12789 | 3' | -59 | NC_003387.1 | + | 50642 | 0.71 | 0.2733 |
Target: 5'- aGUCACGGCCCCcC-CCUCucacACGAAc -3' miRNA: 3'- gCAGUGCCGGGGuGcGGAGc---UGCUUu -5' |
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12789 | 3' | -59 | NC_003387.1 | + | 10684 | 0.71 | 0.266578 |
Target: 5'- gGUCGaucuUGGCgCCCugGCgCUCGGCGAc- -3' miRNA: 3'- gCAGU----GCCG-GGGugCG-GAGCUGCUuu -5' |
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12789 | 3' | -59 | NC_003387.1 | + | 10757 | 0.71 | 0.257392 |
Target: 5'- --aCACGGCCgCGaucgccgguacgaGCCUCGACGAAAu -3' miRNA: 3'- gcaGUGCCGGgGUg------------CGGAGCUGCUUU- -5' |
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12789 | 3' | -59 | NC_003387.1 | + | 7661 | 0.71 | 0.253535 |
Target: 5'- ---gACGGCCCUcgACGCgCUCGGCGAc- -3' miRNA: 3'- gcagUGCCGGGG--UGCG-GAGCUGCUuu -5' |
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12789 | 3' | -59 | NC_003387.1 | + | 48070 | 0.71 | 0.247213 |
Target: 5'- --cCGC-GCCCCgaaGCGCCUCGACGGGu -3' miRNA: 3'- gcaGUGcCGGGG---UGCGGAGCUGCUUu -5' |
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12789 | 3' | -59 | NC_003387.1 | + | 39268 | 0.71 | 0.247213 |
Target: 5'- cCGUCGCGGCCCU-UGCC-CGACa--- -3' miRNA: 3'- -GCAGUGCCGGGGuGCGGaGCUGcuuu -5' |
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12789 | 3' | -59 | NC_003387.1 | + | 34608 | 0.72 | 0.234362 |
Target: 5'- aCG-UACGGCguccacgcauaauCCUGCGCCUCGACGAu- -3' miRNA: 3'- -GCaGUGCCG-------------GGGUGCGGAGCUGCUuu -5' |
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12789 | 3' | -59 | NC_003387.1 | + | 49822 | 0.73 | 0.196046 |
Target: 5'- --cCGCGGCCugCCGCGCC-CGGCGAGc -3' miRNA: 3'- gcaGUGCCGG--GGUGCGGaGCUGCUUu -5' |
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12789 | 3' | -59 | NC_003387.1 | + | 51248 | 0.74 | 0.150278 |
Target: 5'- aCGUCGacgcccUGGCCCUcgACGaCCUCGACGAGGa -3' miRNA: 3'- -GCAGU------GCCGGGG--UGC-GGAGCUGCUUU- -5' |
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12789 | 3' | -59 | NC_003387.1 | + | 43035 | 1.06 | 0.000746 |
Target: 5'- cCGUCACGGCCCCACGCCUCGACGAAAc -3' miRNA: 3'- -GCAGUGCCGGGGUGCGGAGCUGCUUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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