miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12789 3' -59 NC_003387.1 + 23134 0.67 0.445816
Target:  5'- aGUCGCccggcuccGGCCCCucgGCCUCGAaguCGAGc -3'
miRNA:   3'- gCAGUG--------CCGGGGug-CGGAGCU---GCUUu -5'
12789 3' -59 NC_003387.1 + 31423 0.67 0.445816
Target:  5'- gCGcCACuGCUCgACgGCCUCGACGAc- -3'
miRNA:   3'- -GCaGUGcCGGGgUG-CGGAGCUGCUuu -5'
12789 3' -59 NC_003387.1 + 18174 0.67 0.435355
Target:  5'- aCGUCGacccgcugacgauCGGCUgCgagguGCGCCUCGGCGAc- -3'
miRNA:   3'- -GCAGU-------------GCCGGgG-----UGCGGAGCUGCUuu -5'
12789 3' -59 NC_003387.1 + 6888 0.67 0.430647
Target:  5'- cCGUCGuggcacCGGCugccuagugcgcuauCgCCACGCCUUGACGggGg -3'
miRNA:   3'- -GCAGU------GCCG---------------G-GGUGCGGAGCUGCuuU- -5'
12789 3' -59 NC_003387.1 + 23007 0.67 0.425038
Target:  5'- cCGUCGuCGGCCUgggcgccgccgaGCGCCUCGACc--- -3'
miRNA:   3'- -GCAGU-GCCGGGg-----------UGCGGAGCUGcuuu -5'
12789 3' -59 NC_003387.1 + 10667 0.67 0.417626
Target:  5'- uCGaCGCGGCUgcgaCCAcggcCGCCUCGGCGGu- -3'
miRNA:   3'- -GCaGUGCCGG----GGU----GCGGAGCUGCUuu -5'
12789 3' -59 NC_003387.1 + 27909 0.67 0.414867
Target:  5'- --aCGCGGCCUUgaccggcggcguggGCGCCUCGGgGggGg -3'
miRNA:   3'- gcaGUGCCGGGG--------------UGCGGAGCUgCuuU- -5'
12789 3' -59 NC_003387.1 + 49614 0.68 0.408473
Target:  5'- cCGcUgGCGGCCCCGauuuacgaGCCggUCGGCGAGc -3'
miRNA:   3'- -GC-AgUGCCGGGGUg-------CGG--AGCUGCUUu -5'
12789 3' -59 NC_003387.1 + 50414 0.68 0.408473
Target:  5'- aCGUCggGCGGCagaUCGuCGCCUCGGCGu-- -3'
miRNA:   3'- -GCAG--UGCCGg--GGU-GCGGAGCUGCuuu -5'
12789 3' -59 NC_003387.1 + 1284 0.68 0.408473
Target:  5'- -uUCACGGUgaUGCGCCUCGACGc-- -3'
miRNA:   3'- gcAGUGCCGggGUGCGGAGCUGCuuu -5'
12789 3' -59 NC_003387.1 + 21710 0.68 0.407565
Target:  5'- aG-CGCGG-CCCGCGCCgaccuggUCGugGAAAu -3'
miRNA:   3'- gCaGUGCCgGGGUGCGG-------AGCugCUUU- -5'
12789 3' -59 NC_003387.1 + 22220 0.68 0.399447
Target:  5'- -cUCGCGGCCCCG-GCCcCGGCa--- -3'
miRNA:   3'- gcAGUGCCGGGGUgCGGaGCUGcuuu -5'
12789 3' -59 NC_003387.1 + 28185 0.68 0.399447
Target:  5'- aGUUucgcuCGGCCCCuCGCCaaggUGGCGGAAc -3'
miRNA:   3'- gCAGu----GCCGGGGuGCGGa---GCUGCUUU- -5'
12789 3' -59 NC_003387.1 + 24801 0.68 0.398552
Target:  5'- gGUCGCGGCCgaCCugGCgcagcagCUCGGCGu-- -3'
miRNA:   3'- gCAGUGCCGG--GGugCG-------GAGCUGCuuu -5'
12789 3' -59 NC_003387.1 + 40723 0.68 0.390549
Target:  5'- uGUCGaccaGGCCgcgccaCACGuCCUCGAUGAAAu -3'
miRNA:   3'- gCAGUg---CCGGg-----GUGC-GGAGCUGCUUU- -5'
12789 3' -59 NC_003387.1 + 20349 0.68 0.373147
Target:  5'- uGUCGgcCaGCCCC-CGCCUCGuGCGggGg -3'
miRNA:   3'- gCAGU--GcCGGGGuGCGGAGC-UGCuuU- -5'
12789 3' -59 NC_003387.1 + 19822 0.68 0.372291
Target:  5'- uGUC-CGGCaCCCGCGggucgaaucaaucUCUCGACGAc- -3'
miRNA:   3'- gCAGuGCCG-GGGUGC-------------GGAGCUGCUuu -5'
12789 3' -59 NC_003387.1 + 27986 0.68 0.36803
Target:  5'- cCGUUGCGGCgCCCucgauuucggcgagcACGCgCUUGGCGAGc -3'
miRNA:   3'- -GCAGUGCCG-GGG---------------UGCG-GAGCUGCUUu -5'
12789 3' -59 NC_003387.1 + 40367 0.68 0.364645
Target:  5'- -aUCGCGGCCggggCCAaggGCCUCGACGu-- -3'
miRNA:   3'- gcAGUGCCGG----GGUg--CGGAGCUGCuuu -5'
12789 3' -59 NC_003387.1 + 12351 0.69 0.348048
Target:  5'- aCGUCGaGGCCCUugGCCcCGGCc--- -3'
miRNA:   3'- -GCAGUgCCGGGGugCGGaGCUGcuuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.