miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12790 5' -59.6 NC_003387.1 + 23398 0.69 0.336176
Target:  5'- gGCGGCUUucagCGCGgccuggCGCucGUGCCCGc -3'
miRNA:   3'- -CGCCGAGua--GCGCa-----GCGccUACGGGC- -5'
12790 5' -59.6 NC_003387.1 + 44965 0.69 0.352169
Target:  5'- cGCGGCUCAggcCGCGaUCGCcGcUGCCg- -3'
miRNA:   3'- -CGCCGAGUa--GCGC-AGCGcCuACGGgc -5'
12790 5' -59.6 NC_003387.1 + 47123 0.68 0.360364
Target:  5'- uGCaGCUCGcucuuuUCGcCGUCGCGGAUcuuugccaGCUCGg -3'
miRNA:   3'- -CGcCGAGU------AGC-GCAGCGCCUA--------CGGGC- -5'
12790 5' -59.6 NC_003387.1 + 10751 0.68 0.376299
Target:  5'- gGCGGcCUCcgCGCGcagcuccUCGCuGGcgGCCUGc -3'
miRNA:   3'- -CGCC-GAGuaGCGC-------AGCG-CCuaCGGGC- -5'
12790 5' -59.6 NC_003387.1 + 24708 0.68 0.377151
Target:  5'- uCGGCUUGcCGCGcUCGUcGGUGCCCu -3'
miRNA:   3'- cGCCGAGUaGCGC-AGCGcCUACGGGc -5'
12790 5' -59.6 NC_003387.1 + 23679 0.68 0.391829
Target:  5'- cGCGGCUCAagGCGgC-CGGAUacaacgcgagcaacGCCCa -3'
miRNA:   3'- -CGCCGAGUagCGCaGcGCCUA--------------CGGGc -5'
12790 5' -59.6 NC_003387.1 + 22974 0.67 0.412268
Target:  5'- cCGG-UCAUCGUGUCG-GGcgGCgCCGa -3'
miRNA:   3'- cGCCgAGUAGCGCAGCgCCuaCG-GGC- -5'
12790 5' -59.6 NC_003387.1 + 21531 0.67 0.430568
Target:  5'- -aGGCgcgCGUCGCGuUCGaCGuGccGCCCGg -3'
miRNA:   3'- cgCCGa--GUAGCGC-AGC-GC-CuaCGGGC- -5'
12790 5' -59.6 NC_003387.1 + 6895 0.67 0.430568
Target:  5'- cGCGGCgUCGUCGCGggccaucagcCGCGGGacauUGUCgGc -3'
miRNA:   3'- -CGCCG-AGUAGCGCa---------GCGCCU----ACGGgC- -5'
12790 5' -59.6 NC_003387.1 + 17467 0.67 0.430568
Target:  5'- cGCGGCgccaguugUCGUCgGCGUacuUGCGGgcGCCgCGg -3'
miRNA:   3'- -CGCCG--------AGUAG-CGCA---GCGCCuaCGG-GC- -5'
12790 5' -59.6 NC_003387.1 + 30858 0.67 0.430568
Target:  5'- aGCaGCUCGUgCGCGUCGgCaccuGGUGCgCCGg -3'
miRNA:   3'- -CGcCGAGUA-GCGCAGC-Gc---CUACG-GGC- -5'
12790 5' -59.6 NC_003387.1 + 27790 0.67 0.449336
Target:  5'- gGCGGCcccgcCGUCG-GUCGCGGcgGUCa- -3'
miRNA:   3'- -CGCCGa----GUAGCgCAGCGCCuaCGGgc -5'
12790 5' -59.6 NC_003387.1 + 15684 0.67 0.449336
Target:  5'- -aGGC-CGUCaGUGUCGCc-GUGCCCGg -3'
miRNA:   3'- cgCCGaGUAG-CGCAGCGccUACGGGC- -5'
12790 5' -59.6 NC_003387.1 + 9610 0.67 0.449336
Target:  5'- cGCGGCgCcgCGcCGUCGCGcucguacccGgcGCCCGu -3'
miRNA:   3'- -CGCCGaGuaGC-GCAGCGC---------CuaCGGGC- -5'
12790 5' -59.6 NC_003387.1 + 36620 0.66 0.478309
Target:  5'- cGCGGCUgcUgGcCGcCGC-GAUGCCCGa -3'
miRNA:   3'- -CGCCGAguAgC-GCaGCGcCUACGGGC- -5'
12790 5' -59.6 NC_003387.1 + 20097 0.66 0.48817
Target:  5'- -aGGCUCAUagggucaGCGccccCGCGGcgaGCCCGa -3'
miRNA:   3'- cgCCGAGUAg------CGCa---GCGCCua-CGGGC- -5'
12790 5' -59.6 NC_003387.1 + 15101 0.66 0.497126
Target:  5'- gGCGGCgauuaccUCGgcagUGCGgUGCGGGUGCaCCa -3'
miRNA:   3'- -CGCCG-------AGUa---GCGCaGCGCCUACG-GGc -5'
12790 5' -59.6 NC_003387.1 + 33768 0.66 0.498125
Target:  5'- gGCGGCgc--CGCGa-GCGGuuugGCCCGg -3'
miRNA:   3'- -CGCCGaguaGCGCagCGCCua--CGGGC- -5'
12790 5' -59.6 NC_003387.1 + 18405 0.66 0.498125
Target:  5'- aCGGgUCGgcCGCGggcagCGCGGGcUGCUCGg -3'
miRNA:   3'- cGCCgAGUa-GCGCa----GCGCCU-ACGGGC- -5'
12790 5' -59.6 NC_003387.1 + 38062 0.66 0.507163
Target:  5'- gGUGGCUgAgcgagcgcCGCGUcacugugCGCGGcgGCCUGa -3'
miRNA:   3'- -CGCCGAgUa-------GCGCA-------GCGCCuaCGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.