Results 21 - 40 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12790 | 5' | -59.6 | NC_003387.1 | + | 23398 | 0.69 | 0.336176 |
Target: 5'- gGCGGCUUucagCGCGgccuggCGCucGUGCCCGc -3' miRNA: 3'- -CGCCGAGua--GCGCa-----GCGccUACGGGC- -5' |
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12790 | 5' | -59.6 | NC_003387.1 | + | 44965 | 0.69 | 0.352169 |
Target: 5'- cGCGGCUCAggcCGCGaUCGCcGcUGCCg- -3' miRNA: 3'- -CGCCGAGUa--GCGC-AGCGcCuACGGgc -5' |
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12790 | 5' | -59.6 | NC_003387.1 | + | 47123 | 0.68 | 0.360364 |
Target: 5'- uGCaGCUCGcucuuuUCGcCGUCGCGGAUcuuugccaGCUCGg -3' miRNA: 3'- -CGcCGAGU------AGC-GCAGCGCCUA--------CGGGC- -5' |
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12790 | 5' | -59.6 | NC_003387.1 | + | 10751 | 0.68 | 0.376299 |
Target: 5'- gGCGGcCUCcgCGCGcagcuccUCGCuGGcgGCCUGc -3' miRNA: 3'- -CGCC-GAGuaGCGC-------AGCG-CCuaCGGGC- -5' |
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12790 | 5' | -59.6 | NC_003387.1 | + | 24708 | 0.68 | 0.377151 |
Target: 5'- uCGGCUUGcCGCGcUCGUcGGUGCCCu -3' miRNA: 3'- cGCCGAGUaGCGC-AGCGcCUACGGGc -5' |
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12790 | 5' | -59.6 | NC_003387.1 | + | 23679 | 0.68 | 0.391829 |
Target: 5'- cGCGGCUCAagGCGgC-CGGAUacaacgcgagcaacGCCCa -3' miRNA: 3'- -CGCCGAGUagCGCaGcGCCUA--------------CGGGc -5' |
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12790 | 5' | -59.6 | NC_003387.1 | + | 22974 | 0.67 | 0.412268 |
Target: 5'- cCGG-UCAUCGUGUCG-GGcgGCgCCGa -3' miRNA: 3'- cGCCgAGUAGCGCAGCgCCuaCG-GGC- -5' |
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12790 | 5' | -59.6 | NC_003387.1 | + | 30858 | 0.67 | 0.430568 |
Target: 5'- aGCaGCUCGUgCGCGUCGgCaccuGGUGCgCCGg -3' miRNA: 3'- -CGcCGAGUA-GCGCAGC-Gc---CUACG-GGC- -5' |
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12790 | 5' | -59.6 | NC_003387.1 | + | 6895 | 0.67 | 0.430568 |
Target: 5'- cGCGGCgUCGUCGCGggccaucagcCGCGGGacauUGUCgGc -3' miRNA: 3'- -CGCCG-AGUAGCGCa---------GCGCCU----ACGGgC- -5' |
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12790 | 5' | -59.6 | NC_003387.1 | + | 17467 | 0.67 | 0.430568 |
Target: 5'- cGCGGCgccaguugUCGUCgGCGUacuUGCGGgcGCCgCGg -3' miRNA: 3'- -CGCCG--------AGUAG-CGCA---GCGCCuaCGG-GC- -5' |
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12790 | 5' | -59.6 | NC_003387.1 | + | 21531 | 0.67 | 0.430568 |
Target: 5'- -aGGCgcgCGUCGCGuUCGaCGuGccGCCCGg -3' miRNA: 3'- cgCCGa--GUAGCGC-AGC-GC-CuaCGGGC- -5' |
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12790 | 5' | -59.6 | NC_003387.1 | + | 9610 | 0.67 | 0.449336 |
Target: 5'- cGCGGCgCcgCGcCGUCGCGcucguacccGgcGCCCGu -3' miRNA: 3'- -CGCCGaGuaGC-GCAGCGC---------CuaCGGGC- -5' |
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12790 | 5' | -59.6 | NC_003387.1 | + | 15684 | 0.67 | 0.449336 |
Target: 5'- -aGGC-CGUCaGUGUCGCc-GUGCCCGg -3' miRNA: 3'- cgCCGaGUAG-CGCAGCGccUACGGGC- -5' |
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12790 | 5' | -59.6 | NC_003387.1 | + | 27790 | 0.67 | 0.449336 |
Target: 5'- gGCGGCcccgcCGUCG-GUCGCGGcgGUCa- -3' miRNA: 3'- -CGCCGa----GUAGCgCAGCGCCuaCGGgc -5' |
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12790 | 5' | -59.6 | NC_003387.1 | + | 36620 | 0.66 | 0.478309 |
Target: 5'- cGCGGCUgcUgGcCGcCGC-GAUGCCCGa -3' miRNA: 3'- -CGCCGAguAgC-GCaGCGcCUACGGGC- -5' |
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12790 | 5' | -59.6 | NC_003387.1 | + | 20097 | 0.66 | 0.48817 |
Target: 5'- -aGGCUCAUagggucaGCGccccCGCGGcgaGCCCGa -3' miRNA: 3'- cgCCGAGUAg------CGCa---GCGCCua-CGGGC- -5' |
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12790 | 5' | -59.6 | NC_003387.1 | + | 15101 | 0.66 | 0.497126 |
Target: 5'- gGCGGCgauuaccUCGgcagUGCGgUGCGGGUGCaCCa -3' miRNA: 3'- -CGCCG-------AGUa---GCGCaGCGCCUACG-GGc -5' |
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12790 | 5' | -59.6 | NC_003387.1 | + | 18405 | 0.66 | 0.498125 |
Target: 5'- aCGGgUCGgcCGCGggcagCGCGGGcUGCUCGg -3' miRNA: 3'- cGCCgAGUa-GCGCa----GCGCCU-ACGGGC- -5' |
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12790 | 5' | -59.6 | NC_003387.1 | + | 33768 | 0.66 | 0.498125 |
Target: 5'- gGCGGCgc--CGCGa-GCGGuuugGCCCGg -3' miRNA: 3'- -CGCCGaguaGCGCagCGCCua--CGGGC- -5' |
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12790 | 5' | -59.6 | NC_003387.1 | + | 38062 | 0.66 | 0.507163 |
Target: 5'- gGUGGCUgAgcgagcgcCGCGUcacugugCGCGGcgGCCUGa -3' miRNA: 3'- -CGCCGAgUa-------GCGCA-------GCGCCuaCGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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