miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12790 5' -59.6 NC_003387.1 + 42491 1.11 0.000307
Target:  5'- cGCGGCUCAUCGCGUCGCGGAUGCCCGa -3'
miRNA:   3'- -CGCCGAGUAGCGCAGCGCCUACGGGC- -5'
12790 5' -59.6 NC_003387.1 + 42062 0.77 0.101613
Target:  5'- cGCGGCguguacgaccuggCG-CGCGUgcUGCGGGUGCCCGg -3'
miRNA:   3'- -CGCCGa------------GUaGCGCA--GCGCCUACGGGC- -5'
12790 5' -59.6 NC_003387.1 + 2923 0.76 0.114576
Target:  5'- cCGGCUgAUCGUGUCGCGGuucgGCgCCa -3'
miRNA:   3'- cGCCGAgUAGCGCAGCGCCua--CG-GGc -5'
12790 5' -59.6 NC_003387.1 + 44022 0.76 0.120965
Target:  5'- aGCGGCUCGUCGaCGUCggucggcaGCGGcGUGCCg- -3'
miRNA:   3'- -CGCCGAGUAGC-GCAG--------CGCC-UACGGgc -5'
12790 5' -59.6 NC_003387.1 + 38849 0.74 0.159826
Target:  5'- cCGGCggCAUUGCGUUGCGGAUcuucaaacagugugaGCCCc -3'
miRNA:   3'- cGCCGa-GUAGCGCAGCGCCUA---------------CGGGc -5'
12790 5' -59.6 NC_003387.1 + 207 0.73 0.171169
Target:  5'- gGCGGCUUGUCGCucuuGUCGCGGuUGCaCUu -3'
miRNA:   3'- -CGCCGAGUAGCG----CAGCGCCuACG-GGc -5'
12790 5' -59.6 NC_003387.1 + 34118 0.73 0.190024
Target:  5'- uCGGCggCGUCGaCGUCGCGG-UGCgCGa -3'
miRNA:   3'- cGCCGa-GUAGC-GCAGCGCCuACGgGC- -5'
12790 5' -59.6 NC_003387.1 + 41104 0.73 0.195015
Target:  5'- cGCGGCg-GUCGCGgccuUCGU-GAUGCCCGa -3'
miRNA:   3'- -CGCCGagUAGCGC----AGCGcCUACGGGC- -5'
12790 5' -59.6 NC_003387.1 + 11639 0.72 0.198577
Target:  5'- cGCGGCUCAcgaucgccccucgaUCGCGUCGaCaGcgGCCuCGg -3'
miRNA:   3'- -CGCCGAGU--------------AGCGCAGC-GcCuaCGG-GC- -5'
12790 5' -59.6 NC_003387.1 + 42705 0.72 0.200121
Target:  5'- uCGGCUCGUCGuCGUCGUc---GCCCGg -3'
miRNA:   3'- cGCCGAGUAGC-GCAGCGccuaCGGGC- -5'
12790 5' -59.6 NC_003387.1 + 43372 0.72 0.200121
Target:  5'- cCGGCUCGUCGaCGUC-CuGGUGCUCGa -3'
miRNA:   3'- cGCCGAGUAGC-GCAGcGcCUACGGGC- -5'
12790 5' -59.6 NC_003387.1 + 8843 0.72 0.205342
Target:  5'- aGCGGCUCAcCGUG-CGCGaugGCCCa -3'
miRNA:   3'- -CGCCGAGUaGCGCaGCGCcuaCGGGc -5'
12790 5' -59.6 NC_003387.1 + 49191 0.72 0.205342
Target:  5'- gGCGGC-CGUCGaCGUUGCuGA-GCCCGc -3'
miRNA:   3'- -CGCCGaGUAGC-GCAGCGcCUaCGGGC- -5'
12790 5' -59.6 NC_003387.1 + 39252 0.72 0.216138
Target:  5'- gGUGGUgcccUCcUCGcCGUCGCGGcccuUGCCCGa -3'
miRNA:   3'- -CGCCG----AGuAGC-GCAGCGCCu---ACGGGC- -5'
12790 5' -59.6 NC_003387.1 + 28435 0.71 0.247732
Target:  5'- gGCGGCUCAUgGUGUaCacgaucgacgagcugGCGGcgGCCCc -3'
miRNA:   3'- -CGCCGAGUAgCGCA-G---------------CGCCuaCGGGc -5'
12790 5' -59.6 NC_003387.1 + 19150 0.71 0.2578
Target:  5'- gGUGGCUCGUCGacgcuGUCGaGGGcgcgGCCCGc -3'
miRNA:   3'- -CGCCGAGUAGCg----CAGCgCCUa---CGGGC- -5'
12790 5' -59.6 NC_003387.1 + 28891 0.7 0.270853
Target:  5'- gGCGGCUUAggCGCGggCGcCGGGccaccGCCCGa -3'
miRNA:   3'- -CGCCGAGUa-GCGCa-GC-GCCUa----CGGGC- -5'
12790 5' -59.6 NC_003387.1 + 3989 0.7 0.298546
Target:  5'- cGCGGgUCAUgGacuCGUCGCGGcgcacgGUGCUCGa -3'
miRNA:   3'- -CGCCgAGUAgC---GCAGCGCC------UACGGGC- -5'
12790 5' -59.6 NC_003387.1 + 487 0.69 0.328381
Target:  5'- aGCuGCUCGUCGCGaUGCGc--GCCCGc -3'
miRNA:   3'- -CGcCGAGUAGCGCaGCGCcuaCGGGC- -5'
12790 5' -59.6 NC_003387.1 + 23398 0.69 0.336176
Target:  5'- gGCGGCUUucagCGCGgccuggCGCucGUGCCCGc -3'
miRNA:   3'- -CGCCGAGua--GCGCa-----GCGccUACGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.