miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12790 5' -59.6 NC_003387.1 + 42062 0.77 0.101613
Target:  5'- cGCGGCguguacgaccuggCG-CGCGUgcUGCGGGUGCCCGg -3'
miRNA:   3'- -CGCCGa------------GUaGCGCA--GCGCCUACGGGC- -5'
12790 5' -59.6 NC_003387.1 + 22974 0.67 0.412268
Target:  5'- cCGG-UCAUCGUGUCG-GGcgGCgCCGa -3'
miRNA:   3'- cGCCgAGUAGCGCAGCgCCuaCG-GGC- -5'
12790 5' -59.6 NC_003387.1 + 32853 0.69 0.336176
Target:  5'- gGCGGUUC--CGCGUCGCcGAcUGCgCCGa -3'
miRNA:   3'- -CGCCGAGuaGCGCAGCGcCU-ACG-GGC- -5'
12790 5' -59.6 NC_003387.1 + 487 0.69 0.328381
Target:  5'- aGCuGCUCGUCGCGaUGCGc--GCCCGc -3'
miRNA:   3'- -CGcCGAGUAGCGCaGCGCcuaCGGGC- -5'
12790 5' -59.6 NC_003387.1 + 19150 0.71 0.2578
Target:  5'- gGUGGCUCGUCGacgcuGUCGaGGGcgcgGCCCGc -3'
miRNA:   3'- -CGCCGAGUAGCg----CAGCgCCUa---CGGGC- -5'
12790 5' -59.6 NC_003387.1 + 28435 0.71 0.247732
Target:  5'- gGCGGCUCAUgGUGUaCacgaucgacgagcugGCGGcgGCCCc -3'
miRNA:   3'- -CGCCGAGUAgCGCA-G---------------CGCCuaCGGGc -5'
12790 5' -59.6 NC_003387.1 + 12929 0.66 0.508171
Target:  5'- gGUGGCUCGUCgGCG-CuCGGcaGUGCCaCGu -3'
miRNA:   3'- -CGCCGAGUAG-CGCaGcGCC--UACGG-GC- -5'
12790 5' -59.6 NC_003387.1 + 36993 0.66 0.508171
Target:  5'- uGCGGCUgAUC-CGgCGCGGGU-UCCGc -3'
miRNA:   3'- -CGCCGAgUAGcGCaGCGCCUAcGGGC- -5'
12790 5' -59.6 NC_003387.1 + 36620 0.66 0.478309
Target:  5'- cGCGGCUgcUgGcCGcCGC-GAUGCCCGa -3'
miRNA:   3'- -CGCCGAguAgC-GCaGCGcCUACGGGC- -5'
12790 5' -59.6 NC_003387.1 + 23679 0.68 0.391829
Target:  5'- cGCGGCUCAagGCGgC-CGGAUacaacgcgagcaacGCCCa -3'
miRNA:   3'- -CGCCGAGUagCGCaGcGCCUA--------------CGGGc -5'
12790 5' -59.6 NC_003387.1 + 3989 0.7 0.298546
Target:  5'- cGCGGgUCAUgGacuCGUCGCGGcgcacgGUGCUCGa -3'
miRNA:   3'- -CGCCgAGUAgC---GCAGCGCC------UACGGGC- -5'
12790 5' -59.6 NC_003387.1 + 2923 0.76 0.114576
Target:  5'- cCGGCUgAUCGUGUCGCGGuucgGCgCCa -3'
miRNA:   3'- cGCCGAgUAGCGCAGCGCCua--CG-GGc -5'
12790 5' -59.6 NC_003387.1 + 33768 0.66 0.498125
Target:  5'- gGCGGCgc--CGCGa-GCGGuuugGCCCGg -3'
miRNA:   3'- -CGCCGaguaGCGCagCGCCua--CGGGC- -5'
12790 5' -59.6 NC_003387.1 + 38849 0.74 0.159826
Target:  5'- cCGGCggCAUUGCGUUGCGGAUcuucaaacagugugaGCCCc -3'
miRNA:   3'- cGCCGa-GUAGCGCAGCGCCUA---------------CGGGc -5'
12790 5' -59.6 NC_003387.1 + 44965 0.69 0.352169
Target:  5'- cGCGGCUCAggcCGCGaUCGCcGcUGCCg- -3'
miRNA:   3'- -CGCCGAGUa--GCGC-AGCGcCuACGGgc -5'
12790 5' -59.6 NC_003387.1 + 38062 0.66 0.507163
Target:  5'- gGUGGCUgAgcgagcgcCGCGUcacugugCGCGGcgGCCUGa -3'
miRNA:   3'- -CGCCGAgUa-------GCGCA-------GCGCCuaCGGGC- -5'
12790 5' -59.6 NC_003387.1 + 34284 0.66 0.518301
Target:  5'- aCGGUgCG-CGCGUacaCGUGGcUGCCCGa -3'
miRNA:   3'- cGCCGaGUaGCGCA---GCGCCuACGGGC- -5'
12790 5' -59.6 NC_003387.1 + 49191 0.72 0.205342
Target:  5'- gGCGGC-CGUCGaCGUUGCuGA-GCCCGc -3'
miRNA:   3'- -CGCCGaGUAGC-GCAGCGcCUaCGGGC- -5'
12790 5' -59.6 NC_003387.1 + 30858 0.67 0.430568
Target:  5'- aGCaGCUCGUgCGCGUCGgCaccuGGUGCgCCGg -3'
miRNA:   3'- -CGcCGAGUA-GCGCAGC-Gc---CUACG-GGC- -5'
12790 5' -59.6 NC_003387.1 + 17467 0.67 0.430568
Target:  5'- cGCGGCgccaguugUCGUCgGCGUacuUGCGGgcGCCgCGg -3'
miRNA:   3'- -CGCCG--------AGUAG-CGCA---GCGCCuaCGG-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.