miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12790 5' -59.6 NC_003387.1 + 207 0.73 0.171169
Target:  5'- gGCGGCUUGUCGCucuuGUCGCGGuUGCaCUu -3'
miRNA:   3'- -CGCCGAGUAGCG----CAGCGCCuACG-GGc -5'
12790 5' -59.6 NC_003387.1 + 373 0.66 0.508171
Target:  5'- cUGGCUCGUCGCGgCGaauGAUGCgaCGg -3'
miRNA:   3'- cGCCGAGUAGCGCaGCgc-CUACGg-GC- -5'
12790 5' -59.6 NC_003387.1 + 487 0.69 0.328381
Target:  5'- aGCuGCUCGUCGCGaUGCGc--GCCCGc -3'
miRNA:   3'- -CGcCGAGUAGCGCaGCGCcuaCGGGC- -5'
12790 5' -59.6 NC_003387.1 + 2923 0.76 0.114576
Target:  5'- cCGGCUgAUCGUGUCGCGGuucgGCgCCa -3'
miRNA:   3'- cGCCGAgUAGCGCAGCGCCua--CG-GGc -5'
12790 5' -59.6 NC_003387.1 + 3724 0.66 0.518301
Target:  5'- aGCGGCcaCAgccaCGCGaUCGaCGGccgcAUGCCCGc -3'
miRNA:   3'- -CGCCGa-GUa---GCGC-AGC-GCC----UACGGGC- -5'
12790 5' -59.6 NC_003387.1 + 3989 0.7 0.298546
Target:  5'- cGCGGgUCAUgGacuCGUCGCGGcgcacgGUGCUCGa -3'
miRNA:   3'- -CGCCgAGUAgC---GCAGCGCC------UACGGGC- -5'
12790 5' -59.6 NC_003387.1 + 6895 0.67 0.430568
Target:  5'- cGCGGCgUCGUCGCGggccaucagcCGCGGGacauUGUCgGc -3'
miRNA:   3'- -CGCCG-AGUAGCGCa---------GCGCCU----ACGGgC- -5'
12790 5' -59.6 NC_003387.1 + 8843 0.72 0.205342
Target:  5'- aGCGGCUCAcCGUG-CGCGaugGCCCa -3'
miRNA:   3'- -CGCCGAGUaGCGCaGCGCcuaCGGGc -5'
12790 5' -59.6 NC_003387.1 + 9610 0.67 0.449336
Target:  5'- cGCGGCgCcgCGcCGUCGCGcucguacccGgcGCCCGu -3'
miRNA:   3'- -CGCCGaGuaGC-GCAGCGC---------CuaCGGGC- -5'
12790 5' -59.6 NC_003387.1 + 10751 0.68 0.376299
Target:  5'- gGCGGcCUCcgCGCGcagcuccUCGCuGGcgGCCUGc -3'
miRNA:   3'- -CGCC-GAGuaGCGC-------AGCG-CCuaCGGGC- -5'
12790 5' -59.6 NC_003387.1 + 11639 0.72 0.198577
Target:  5'- cGCGGCUCAcgaucgccccucgaUCGCGUCGaCaGcgGCCuCGg -3'
miRNA:   3'- -CGCCGAGU--------------AGCGCAGC-GcCuaCGG-GC- -5'
12790 5' -59.6 NC_003387.1 + 12929 0.66 0.508171
Target:  5'- gGUGGCUCGUCgGCG-CuCGGcaGUGCCaCGu -3'
miRNA:   3'- -CGCCGAGUAG-CGCaGcGCC--UACGG-GC- -5'
12790 5' -59.6 NC_003387.1 + 15101 0.66 0.497126
Target:  5'- gGCGGCgauuaccUCGgcagUGCGgUGCGGGUGCaCCa -3'
miRNA:   3'- -CGCCG-------AGUa---GCGCaGCGCCUACG-GGc -5'
12790 5' -59.6 NC_003387.1 + 15684 0.67 0.449336
Target:  5'- -aGGC-CGUCaGUGUCGCc-GUGCCCGg -3'
miRNA:   3'- cgCCGaGUAG-CGCAGCGccUACGGGC- -5'
12790 5' -59.6 NC_003387.1 + 17467 0.67 0.430568
Target:  5'- cGCGGCgccaguugUCGUCgGCGUacuUGCGGgcGCCgCGg -3'
miRNA:   3'- -CGCCG--------AGUAG-CGCA---GCGCCuaCGG-GC- -5'
12790 5' -59.6 NC_003387.1 + 18405 0.66 0.498125
Target:  5'- aCGGgUCGgcCGCGggcagCGCGGGcUGCUCGg -3'
miRNA:   3'- cGCCgAGUa-GCGCa----GCGCCU-ACGGGC- -5'
12790 5' -59.6 NC_003387.1 + 19150 0.71 0.2578
Target:  5'- gGUGGCUCGUCGacgcuGUCGaGGGcgcgGCCCGc -3'
miRNA:   3'- -CGCCGAGUAGCg----CAGCgCCUa---CGGGC- -5'
12790 5' -59.6 NC_003387.1 + 20097 0.66 0.48817
Target:  5'- -aGGCUCAUagggucaGCGccccCGCGGcgaGCCCGa -3'
miRNA:   3'- cgCCGAGUAg------CGCa---GCGCCua-CGGGC- -5'
12790 5' -59.6 NC_003387.1 + 20773 0.66 0.518301
Target:  5'- uGCGGC-CGgggaUGCGaccggCGCGGAucUGCUCGg -3'
miRNA:   3'- -CGCCGaGUa---GCGCa----GCGCCU--ACGGGC- -5'
12790 5' -59.6 NC_003387.1 + 21531 0.67 0.430568
Target:  5'- -aGGCgcgCGUCGCGuUCGaCGuGccGCCCGg -3'
miRNA:   3'- cgCCGa--GUAGCGC-AGC-GC-CuaCGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.