miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12790 5' -59.6 NC_003387.1 + 50758 0.66 0.518301
Target:  5'- --cGCagGUCGgGUCGCGGcgGUCCc -3'
miRNA:   3'- cgcCGagUAGCgCAGCGCCuaCGGGc -5'
12790 5' -59.6 NC_003387.1 + 50572 0.66 0.518301
Target:  5'- cGCGGCUCAUCGaguccUCGgGGAacUCCa -3'
miRNA:   3'- -CGCCGAGUAGCgc---AGCgCCUacGGGc -5'
12790 5' -59.6 NC_003387.1 + 50187 0.66 0.518301
Target:  5'- cGCGGCgac-CGCGU-GCGGAacaccgGCCCc -3'
miRNA:   3'- -CGCCGaguaGCGCAgCGCCUa-----CGGGc -5'
12790 5' -59.6 NC_003387.1 + 49191 0.72 0.205342
Target:  5'- gGCGGC-CGUCGaCGUUGCuGA-GCCCGc -3'
miRNA:   3'- -CGCCGaGUAGC-GCAGCGcCUaCGGGC- -5'
12790 5' -59.6 NC_003387.1 + 47123 0.68 0.360364
Target:  5'- uGCaGCUCGcucuuuUCGcCGUCGCGGAUcuuugccaGCUCGg -3'
miRNA:   3'- -CGcCGAGU------AGC-GCAGCGCCUA--------CGGGC- -5'
12790 5' -59.6 NC_003387.1 + 46132 0.66 0.518301
Target:  5'- cGCGGaaCAccggguugccguUCGCGUCGCGaAUGUUCGc -3'
miRNA:   3'- -CGCCgaGU------------AGCGCAGCGCcUACGGGC- -5'
12790 5' -59.6 NC_003387.1 + 44965 0.69 0.352169
Target:  5'- cGCGGCUCAggcCGCGaUCGCcGcUGCCg- -3'
miRNA:   3'- -CGCCGAGUa--GCGC-AGCGcCuACGGgc -5'
12790 5' -59.6 NC_003387.1 + 44022 0.76 0.120965
Target:  5'- aGCGGCUCGUCGaCGUCggucggcaGCGGcGUGCCg- -3'
miRNA:   3'- -CGCCGAGUAGC-GCAG--------CGCC-UACGGgc -5'
12790 5' -59.6 NC_003387.1 + 43372 0.72 0.200121
Target:  5'- cCGGCUCGUCGaCGUC-CuGGUGCUCGa -3'
miRNA:   3'- cGCCGAGUAGC-GCAGcGcCUACGGGC- -5'
12790 5' -59.6 NC_003387.1 + 42705 0.72 0.200121
Target:  5'- uCGGCUCGUCGuCGUCGUc---GCCCGg -3'
miRNA:   3'- cGCCGAGUAGC-GCAGCGccuaCGGGC- -5'
12790 5' -59.6 NC_003387.1 + 42491 1.11 0.000307
Target:  5'- cGCGGCUCAUCGCGUCGCGGAUGCCCGa -3'
miRNA:   3'- -CGCCGAGUAGCGCAGCGCCUACGGGC- -5'
12790 5' -59.6 NC_003387.1 + 42062 0.77 0.101613
Target:  5'- cGCGGCguguacgaccuggCG-CGCGUgcUGCGGGUGCCCGg -3'
miRNA:   3'- -CGCCGa------------GUaGCGCA--GCGCCUACGGGC- -5'
12790 5' -59.6 NC_003387.1 + 41104 0.73 0.195015
Target:  5'- cGCGGCg-GUCGCGgccuUCGU-GAUGCCCGa -3'
miRNA:   3'- -CGCCGagUAGCGC----AGCGcCUACGGGC- -5'
12790 5' -59.6 NC_003387.1 + 40350 0.66 0.518301
Target:  5'- aGCGGCagAUUGCGggccgUCGCGGcgGCg-- -3'
miRNA:   3'- -CGCCGagUAGCGC-----AGCGCCuaCGggc -5'
12790 5' -59.6 NC_003387.1 + 39252 0.72 0.216138
Target:  5'- gGUGGUgcccUCcUCGcCGUCGCGGcccuUGCCCGa -3'
miRNA:   3'- -CGCCG----AGuAGC-GCAGCGCCu---ACGGGC- -5'
12790 5' -59.6 NC_003387.1 + 38849 0.74 0.159826
Target:  5'- cCGGCggCAUUGCGUUGCGGAUcuucaaacagugugaGCCCc -3'
miRNA:   3'- cGCCGa-GUAGCGCAGCGCCUA---------------CGGGc -5'
12790 5' -59.6 NC_003387.1 + 38062 0.66 0.507163
Target:  5'- gGUGGCUgAgcgagcgcCGCGUcacugugCGCGGcgGCCUGa -3'
miRNA:   3'- -CGCCGAgUa-------GCGCA-------GCGCCuaCGGGC- -5'
12790 5' -59.6 NC_003387.1 + 36993 0.66 0.508171
Target:  5'- uGCGGCUgAUC-CGgCGCGGGU-UCCGc -3'
miRNA:   3'- -CGCCGAgUAGcGCaGCGCCUAcGGGC- -5'
12790 5' -59.6 NC_003387.1 + 36620 0.66 0.478309
Target:  5'- cGCGGCUgcUgGcCGcCGC-GAUGCCCGa -3'
miRNA:   3'- -CGCCGAguAgC-GCaGCGcCUACGGGC- -5'
12790 5' -59.6 NC_003387.1 + 34284 0.66 0.518301
Target:  5'- aCGGUgCG-CGCGUacaCGUGGcUGCCCGa -3'
miRNA:   3'- cGCCGaGUaGCGCA---GCGCCuACGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.