miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12790 5' -59.6 NC_003387.1 + 3724 0.66 0.518301
Target:  5'- aGCGGCcaCAgccaCGCGaUCGaCGGccgcAUGCCCGc -3'
miRNA:   3'- -CGCCGa-GUa---GCGC-AGC-GCC----UACGGGC- -5'
12790 5' -59.6 NC_003387.1 + 50758 0.66 0.518301
Target:  5'- --cGCagGUCGgGUCGCGGcgGUCCc -3'
miRNA:   3'- cgcCGagUAGCgCAGCGCCuaCGGGc -5'
12790 5' -59.6 NC_003387.1 + 50572 0.66 0.518301
Target:  5'- cGCGGCUCAUCGaguccUCGgGGAacUCCa -3'
miRNA:   3'- -CGCCGAGUAGCgc---AGCgCCUacGGGc -5'
12790 5' -59.6 NC_003387.1 + 50187 0.66 0.518301
Target:  5'- cGCGGCgac-CGCGU-GCGGAacaccgGCCCc -3'
miRNA:   3'- -CGCCGaguaGCGCAgCGCCUa-----CGGGc -5'
12790 5' -59.6 NC_003387.1 + 46132 0.66 0.518301
Target:  5'- cGCGGaaCAccggguugccguUCGCGUCGCGaAUGUUCGc -3'
miRNA:   3'- -CGCCgaGU------------AGCGCAGCGCcUACGGGC- -5'
12790 5' -59.6 NC_003387.1 + 40350 0.66 0.518301
Target:  5'- aGCGGCagAUUGCGggccgUCGCGGcgGCg-- -3'
miRNA:   3'- -CGCCGagUAGCGC-----AGCGCCuaCGggc -5'
12790 5' -59.6 NC_003387.1 + 20773 0.66 0.518301
Target:  5'- uGCGGC-CGgggaUGCGaccggCGCGGAucUGCUCGg -3'
miRNA:   3'- -CGCCGaGUa---GCGCa----GCGCCU--ACGGGC- -5'
12790 5' -59.6 NC_003387.1 + 34284 0.66 0.518301
Target:  5'- aCGGUgCG-CGCGUacaCGUGGcUGCCCGa -3'
miRNA:   3'- cGCCGaGUaGCGCA---GCGCCuACGGGC- -5'
12790 5' -59.6 NC_003387.1 + 373 0.66 0.508171
Target:  5'- cUGGCUCGUCGCGgCGaauGAUGCgaCGg -3'
miRNA:   3'- cGCCGAGUAGCGCaGCgc-CUACGg-GC- -5'
12790 5' -59.6 NC_003387.1 + 36993 0.66 0.508171
Target:  5'- uGCGGCUgAUC-CGgCGCGGGU-UCCGc -3'
miRNA:   3'- -CGCCGAgUAGcGCaGCGCCUAcGGGC- -5'
12790 5' -59.6 NC_003387.1 + 12929 0.66 0.508171
Target:  5'- gGUGGCUCGUCgGCG-CuCGGcaGUGCCaCGu -3'
miRNA:   3'- -CGCCGAGUAG-CGCaGcGCC--UACGG-GC- -5'
12790 5' -59.6 NC_003387.1 + 38062 0.66 0.507163
Target:  5'- gGUGGCUgAgcgagcgcCGCGUcacugugCGCGGcgGCCUGa -3'
miRNA:   3'- -CGCCGAgUa-------GCGCA-------GCGCCuaCGGGC- -5'
12790 5' -59.6 NC_003387.1 + 33768 0.66 0.498125
Target:  5'- gGCGGCgc--CGCGa-GCGGuuugGCCCGg -3'
miRNA:   3'- -CGCCGaguaGCGCagCGCCua--CGGGC- -5'
12790 5' -59.6 NC_003387.1 + 18405 0.66 0.498125
Target:  5'- aCGGgUCGgcCGCGggcagCGCGGGcUGCUCGg -3'
miRNA:   3'- cGCCgAGUa-GCGCa----GCGCCU-ACGGGC- -5'
12790 5' -59.6 NC_003387.1 + 15101 0.66 0.497126
Target:  5'- gGCGGCgauuaccUCGgcagUGCGgUGCGGGUGCaCCa -3'
miRNA:   3'- -CGCCG-------AGUa---GCGCaGCGCCUACG-GGc -5'
12790 5' -59.6 NC_003387.1 + 20097 0.66 0.48817
Target:  5'- -aGGCUCAUagggucaGCGccccCGCGGcgaGCCCGa -3'
miRNA:   3'- cgCCGAGUAg------CGCa---GCGCCua-CGGGC- -5'
12790 5' -59.6 NC_003387.1 + 36620 0.66 0.478309
Target:  5'- cGCGGCUgcUgGcCGcCGC-GAUGCCCGa -3'
miRNA:   3'- -CGCCGAguAgC-GCaGCGcCUACGGGC- -5'
12790 5' -59.6 NC_003387.1 + 9610 0.67 0.449336
Target:  5'- cGCGGCgCcgCGcCGUCGCGcucguacccGgcGCCCGu -3'
miRNA:   3'- -CGCCGaGuaGC-GCAGCGC---------CuaCGGGC- -5'
12790 5' -59.6 NC_003387.1 + 15684 0.67 0.449336
Target:  5'- -aGGC-CGUCaGUGUCGCc-GUGCCCGg -3'
miRNA:   3'- cgCCGaGUAG-CGCAGCGccUACGGGC- -5'
12790 5' -59.6 NC_003387.1 + 27790 0.67 0.449336
Target:  5'- gGCGGCcccgcCGUCG-GUCGCGGcgGUCa- -3'
miRNA:   3'- -CGCCGa----GUAGCgCAGCGCCuaCGGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.