miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12791 3' -52.8 NC_003387.1 + 254 0.71 0.509077
Target:  5'- cUCAGCgugcagUGcccuGGCUGCGCCGcGcCGGUCg -3'
miRNA:   3'- -AGUCGa-----AC----UUGACGCGGCuCaGCUAG- -5'
12791 3' -52.8 NC_003387.1 + 3946 0.67 0.73171
Target:  5'- aUCAGCggcGAgcugGCUGCGCCGAGcacCGcgUg -3'
miRNA:   3'- -AGUCGaa-CU----UGACGCGGCUCa--GCuaG- -5'
12791 3' -52.8 NC_003387.1 + 4751 0.67 0.742506
Target:  5'- aCGGC---AAgaGUGUCGAGUCGAUCc -3'
miRNA:   3'- aGUCGaacUUgaCGCGGCUCAGCUAG- -5'
12791 3' -52.8 NC_003387.1 + 6133 0.67 0.773102
Target:  5'- gCGGCUUGAGg-GCGCCacugugaGGGUCGGc- -3'
miRNA:   3'- aGUCGAACUUgaCGCGG-------CUCAGCUag -5'
12791 3' -52.8 NC_003387.1 + 11098 0.69 0.61997
Target:  5'- cUUAGCUUGGGCgcgGuCGUCGAacUCGAUCa -3'
miRNA:   3'- -AGUCGAACUUGa--C-GCGGCUc-AGCUAG- -5'
12791 3' -52.8 NC_003387.1 + 13455 0.71 0.552712
Target:  5'- gCAGCUUGcccAGCU-CGCCGAgGUCGAacUCg -3'
miRNA:   3'- aGUCGAAC---UUGAcGCGGCU-CAGCU--AG- -5'
12791 3' -52.8 NC_003387.1 + 13883 0.68 0.709815
Target:  5'- uUCAuGcCUUGAGCUGCGgCGGcucGUCGAg- -3'
miRNA:   3'- -AGU-C-GAACUUGACGCgGCU---CAGCUag -5'
12791 3' -52.8 NC_003387.1 + 19924 0.81 0.133997
Target:  5'- --uGCUUGAGCUGCGCCaGGUCGAc- -3'
miRNA:   3'- aguCGAACUUGACGCGGcUCAGCUag -5'
12791 3' -52.8 NC_003387.1 + 24564 0.74 0.379418
Target:  5'- aCGGCgagccGAGCUG-GCCGGGcUCGAUCg -3'
miRNA:   3'- aGUCGaa---CUUGACgCGGCUC-AGCUAG- -5'
12791 3' -52.8 NC_003387.1 + 24840 0.73 0.407371
Target:  5'- gCGGCUggccGGGCUccugcucgaccGCGCCGGuGUCGAUCg -3'
miRNA:   3'- aGUCGAa---CUUGA-----------CGCGGCU-CAGCUAG- -5'
12791 3' -52.8 NC_003387.1 + 26599 0.71 0.551606
Target:  5'- gCGGCgacGGAC-GCGCCGAccuggcgcagguaGUCGAUCg -3'
miRNA:   3'- aGUCGaa-CUUGaCGCGGCU-------------CAGCUAG- -5'
12791 3' -52.8 NC_003387.1 + 27547 0.66 0.79447
Target:  5'- gCGGCgccgGGGCcaccGCGCCGAGcCGAa- -3'
miRNA:   3'- aGUCGaa--CUUGa---CGCGGCUCaGCUag -5'
12791 3' -52.8 NC_003387.1 + 27919 0.66 0.823601
Target:  5'- -gAGCU---GCUGCGCCaGGUCGGc- -3'
miRNA:   3'- agUCGAacuUGACGCGGcUCAGCUag -5'
12791 3' -52.8 NC_003387.1 + 28995 0.74 0.379418
Target:  5'- --cGCUgGAucgcCUGCGCCGAGUCGuUCg -3'
miRNA:   3'- aguCGAaCUu---GACGCGGCUCAGCuAG- -5'
12791 3' -52.8 NC_003387.1 + 29659 0.66 0.823601
Target:  5'- cCGGCUgcucGAACgccuCGCCGAcGUCGAcgUCg -3'
miRNA:   3'- aGUCGAa---CUUGac--GCGGCU-CAGCU--AG- -5'
12791 3' -52.8 NC_003387.1 + 29684 0.69 0.647104
Target:  5'- aUCGGCacgccgccgggcacgUUGAacuGCUGCGUCGAGcCGGUg -3'
miRNA:   3'- -AGUCG---------------AACU---UGACGCGGCUCaGCUAg -5'
12791 3' -52.8 NC_003387.1 + 29786 0.69 0.665155
Target:  5'- gUCAGCUUGcGCguguauccgGCGCCGcuaauuUCGGUCg -3'
miRNA:   3'- -AGUCGAACuUGa--------CGCGGCuc----AGCUAG- -5'
12791 3' -52.8 NC_003387.1 + 31301 0.66 0.8329
Target:  5'- gUAGCU---GCUGCGCCGGGcCGc-- -3'
miRNA:   3'- aGUCGAacuUGACGCGGCUCaGCuag -5'
12791 3' -52.8 NC_003387.1 + 33430 0.69 0.642583
Target:  5'- -gAGCUggaucGGGCUGC-CCGAGgCGGUCa -3'
miRNA:   3'- agUCGAa----CUUGACGcGGCUCaGCUAG- -5'
12791 3' -52.8 NC_003387.1 + 33956 0.67 0.746791
Target:  5'- gCAGCUugccggggucggguaUGAGCUGcCGCagCGGGUCGcgGUCg -3'
miRNA:   3'- aGUCGA---------------ACUUGAC-GCG--GCUCAGC--UAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.