miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12791 3' -52.8 NC_003387.1 + 51425 0.75 0.344199
Target:  5'- gCGGCgccgccucGAACUGCGCCG-GUCGAa- -3'
miRNA:   3'- aGUCGaa------CUUGACGCGGCuCAGCUag -5'
12791 3' -52.8 NC_003387.1 + 27919 0.66 0.823601
Target:  5'- -gAGCU---GCUGCGCCaGGUCGGc- -3'
miRNA:   3'- agUCGAacuUGACGCGGcUCAGCUag -5'
12791 3' -52.8 NC_003387.1 + 34252 0.66 0.79447
Target:  5'- --cGCUcGAccgGCUGauCGCCGAGUCGggCg -3'
miRNA:   3'- aguCGAaCU---UGAC--GCGGCUCAGCuaG- -5'
12791 3' -52.8 NC_003387.1 + 39224 0.67 0.774136
Target:  5'- gCAGUggGAGCggguaccgGCGCCGGG-CGAg- -3'
miRNA:   3'- aGUCGaaCUUGa-------CGCGGCUCaGCUag -5'
12791 3' -52.8 NC_003387.1 + 48946 0.68 0.709815
Target:  5'- cUCAGCUUcGAggcGCUGCGU-GAGcuggCGAUCg -3'
miRNA:   3'- -AGUCGAA-CU---UGACGCGgCUCa---GCUAG- -5'
12791 3' -52.8 NC_003387.1 + 45381 0.68 0.709815
Target:  5'- cCGGCgguuAGCUGCGCCcggccgcccGAGcCGAUCg -3'
miRNA:   3'- aGUCGaac-UUGACGCGG---------CUCaGCUAG- -5'
12791 3' -52.8 NC_003387.1 + 49641 0.66 0.832901
Target:  5'- gUCGGC--GAGCUugGCcCCGAGUgGGUCg -3'
miRNA:   3'- -AGUCGaaCUUGA--CGcGGCUCAgCUAG- -5'
12791 3' -52.8 NC_003387.1 + 41967 0.66 0.814089
Target:  5'- cCAGCgagGAGCUGCGCgCgGAGgccgccgCGGUg -3'
miRNA:   3'- aGUCGaa-CUUGACGCG-G-CUCa------GCUAg -5'
12791 3' -52.8 NC_003387.1 + 4751 0.67 0.742506
Target:  5'- aCGGC---AAgaGUGUCGAGUCGAUCc -3'
miRNA:   3'- aGUCGaacUUgaCGCGGCUCAGCUAG- -5'
12791 3' -52.8 NC_003387.1 + 13883 0.68 0.709815
Target:  5'- uUCAuGcCUUGAGCUGCGgCGGcucGUCGAg- -3'
miRNA:   3'- -AGU-C-GAACUUGACGCgGCU---CAGCUag -5'
12791 3' -52.8 NC_003387.1 + 254 0.71 0.509077
Target:  5'- cUCAGCgugcagUGcccuGGCUGCGCCGcGcCGGUCg -3'
miRNA:   3'- -AGUCGa-----AC----UUGACGCGGCuCaGCUAG- -5'
12791 3' -52.8 NC_003387.1 + 46924 0.68 0.709815
Target:  5'- gCAcGCUUGAGCcggGCaCCGAgguGUCGAUCc -3'
miRNA:   3'- aGU-CGAACUUGa--CGcGGCU---CAGCUAG- -5'
12791 3' -52.8 NC_003387.1 + 42756 0.66 0.804375
Target:  5'- aUCGGCUgcgcuGgUGCcCCGAGUCGggCa -3'
miRNA:   3'- -AGUCGAacu--UgACGcGGCUCAGCuaG- -5'
12791 3' -52.8 NC_003387.1 + 29659 0.66 0.823601
Target:  5'- cCGGCUgcucGAACgccuCGCCGAcGUCGAcgUCg -3'
miRNA:   3'- aGUCGAa---CUUGac--GCGGCU-CAGCU--AG- -5'
12791 3' -52.8 NC_003387.1 + 26599 0.71 0.551606
Target:  5'- gCGGCgacGGAC-GCGCCGAccuggcgcagguaGUCGAUCg -3'
miRNA:   3'- aGUCGaa-CUUGaCGCGGCU-------------CAGCUAG- -5'
12791 3' -52.8 NC_003387.1 + 13455 0.71 0.552712
Target:  5'- gCAGCUUGcccAGCU-CGCCGAgGUCGAacUCg -3'
miRNA:   3'- aGUCGAAC---UUGAcGCGGCU-CAGCU--AG- -5'
12791 3' -52.8 NC_003387.1 + 11098 0.69 0.61997
Target:  5'- cUUAGCUUGGGCgcgGuCGUCGAacUCGAUCa -3'
miRNA:   3'- -AGUCGAACUUGa--C-GCGGCUc-AGCUAG- -5'
12791 3' -52.8 NC_003387.1 + 33430 0.69 0.642583
Target:  5'- -gAGCUggaucGGGCUGC-CCGAGgCGGUCa -3'
miRNA:   3'- agUCGAa----CUUGACGcGGCUCaGCUAG- -5'
12791 3' -52.8 NC_003387.1 + 27547 0.66 0.79447
Target:  5'- gCGGCgccgGGGCcaccGCGCCGAGcCGAa- -3'
miRNA:   3'- aGUCGaa--CUUGa---CGCGGCUCaGCUag -5'
12791 3' -52.8 NC_003387.1 + 33956 0.67 0.746791
Target:  5'- gCAGCUugccggggucggguaUGAGCUGcCGCagCGGGUCGcgGUCg -3'
miRNA:   3'- aGUCGA---------------ACUUGAC-GCG--GCUCAGC--UAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.