Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12794 | 5' | -55.2 | NC_003387.1 | + | 41608 | 1.04 | 0.001802 |
Target: 5'- cUUGUCGAACACGCCCAUAAGCCCGGUc -3' miRNA: 3'- -AACAGCUUGUGCGGGUAUUCGGGCCA- -5' |
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12794 | 5' | -55.2 | NC_003387.1 | + | 30221 | 0.76 | 0.182593 |
Target: 5'- -cGUCGAGCGCGCCgCcgAGgccgucGCCCGGUa -3' miRNA: 3'- aaCAGCUUGUGCGG-GuaUU------CGGGCCA- -5' |
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12794 | 5' | -55.2 | NC_003387.1 | + | 26460 | 0.76 | 0.191295 |
Target: 5'- -gGUCGAGCACGCCCAUGcugaccaucagcacGGCgaucgCCGGg -3' miRNA: 3'- aaCAGCUUGUGCGGGUAU--------------UCG-----GGCCa -5' |
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12794 | 5' | -55.2 | NC_003387.1 | + | 23164 | 0.71 | 0.404193 |
Target: 5'- -aGUCGAGCAcccacaccucguCGCUCAU--GCCCGGUc -3' miRNA: 3'- aaCAGCUUGU------------GCGGGUAuuCGGGCCA- -5' |
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12794 | 5' | -55.2 | NC_003387.1 | + | 49090 | 0.7 | 0.432965 |
Target: 5'- -gGUCGAcggcgauacccGCACGCCCGcucAGCUCGGc -3' miRNA: 3'- aaCAGCU-----------UGUGCGGGUau-UCGGGCCa -5' |
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12794 | 5' | -55.2 | NC_003387.1 | + | 37842 | 0.69 | 0.483439 |
Target: 5'- -gGUCGGGCAC-CCC-UGcGCCCGGc -3' miRNA: 3'- aaCAGCUUGUGcGGGuAUuCGGGCCa -5' |
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12794 | 5' | -55.2 | NC_003387.1 | + | 17796 | 0.69 | 0.493875 |
Target: 5'- aUGUCGGagcGCACGCCCGaGAGCaaagacgaGGUg -3' miRNA: 3'- aACAGCU---UGUGCGGGUaUUCGgg------CCA- -5' |
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12794 | 5' | -55.2 | NC_003387.1 | + | 48250 | 0.68 | 0.536575 |
Target: 5'- -gGUCGGcCGCGgCCAgcAGCUCGGg -3' miRNA: 3'- aaCAGCUuGUGCgGGUauUCGGGCCa -5' |
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12794 | 5' | -55.2 | NC_003387.1 | + | 30186 | 0.68 | 0.536575 |
Target: 5'- -cGUCGAGC-CaGCCCuc-GGCCUGGg -3' miRNA: 3'- aaCAGCUUGuG-CGGGuauUCGGGCCa -5' |
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12794 | 5' | -55.2 | NC_003387.1 | + | 34685 | 0.68 | 0.547458 |
Target: 5'- -cGaCGAaaaACACG-CCGUGGGCCUGGUa -3' miRNA: 3'- aaCaGCU---UGUGCgGGUAUUCGGGCCA- -5' |
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12794 | 5' | -55.2 | NC_003387.1 | + | 41530 | 0.68 | 0.558409 |
Target: 5'- cUUGUCcGACAUGCCCuu-GGCCCa-- -3' miRNA: 3'- -AACAGcUUGUGCGGGuauUCGGGcca -5' |
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12794 | 5' | -55.2 | NC_003387.1 | + | 49679 | 0.68 | 0.569421 |
Target: 5'- -gGUCGAGCAgUGCUgagCGUGcAGCCCGGc -3' miRNA: 3'- aaCAGCUUGU-GCGG---GUAU-UCGGGCCa -5' |
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12794 | 5' | -55.2 | NC_003387.1 | + | 20551 | 0.67 | 0.580486 |
Target: 5'- -cGUCGGcUGCGCCgAUAAcGCcCCGGUg -3' miRNA: 3'- aaCAGCUuGUGCGGgUAUU-CG-GGCCA- -5' |
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12794 | 5' | -55.2 | NC_003387.1 | + | 40122 | 0.67 | 0.591595 |
Target: 5'- aUGUCGA--GCGCCC---GGCCCGa- -3' miRNA: 3'- aACAGCUugUGCGGGuauUCGGGCca -5' |
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12794 | 5' | -55.2 | NC_003387.1 | + | 18486 | 0.67 | 0.591595 |
Target: 5'- -gGUCGAGCGC-CCCGaGGGCCUGc- -3' miRNA: 3'- aaCAGCUUGUGcGGGUaUUCGGGCca -5' |
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12794 | 5' | -55.2 | NC_003387.1 | + | 1230 | 0.67 | 0.60274 |
Target: 5'- -cGUCGAGC-UGCUCcu--GCCCGGUc -3' miRNA: 3'- aaCAGCUUGuGCGGGuauuCGGGCCA- -5' |
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12794 | 5' | -55.2 | NC_003387.1 | + | 27882 | 0.67 | 0.60274 |
Target: 5'- -gGUCGAGCAggaGCCCGgccagccGCCCGaGUa -3' miRNA: 3'- aaCAGCUUGUg--CGGGUauu----CGGGC-CA- -5' |
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12794 | 5' | -55.2 | NC_003387.1 | + | 9991 | 0.67 | 0.636291 |
Target: 5'- ---cCGAGCACGCCCugacGAGCaggucggcguugCCGGUa -3' miRNA: 3'- aacaGCUUGUGCGGGua--UUCG------------GGCCA- -5' |
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12794 | 5' | -55.2 | NC_003387.1 | + | 13345 | 0.67 | 0.636291 |
Target: 5'- gUGUCGGGCAUGCUCGaAAGCaUUGGc -3' miRNA: 3'- aACAGCUUGUGCGGGUaUUCG-GGCCa -5' |
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12794 | 5' | -55.2 | NC_003387.1 | + | 48717 | 0.67 | 0.640768 |
Target: 5'- gUUGUCGAGCACcgugcgccgcgacgaGUCCAUGAccGCgCGGg -3' miRNA: 3'- -AACAGCUUGUG---------------CGGGUAUU--CGgGCCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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