miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12794 5' -55.2 NC_003387.1 + 1230 0.67 0.60274
Target:  5'- -cGUCGAGC-UGCUCcu--GCCCGGUc -3'
miRNA:   3'- aaCAGCUUGuGCGGGuauuCGGGCCA- -5'
12794 5' -55.2 NC_003387.1 + 8189 0.66 0.669806
Target:  5'- --uUCGAGCccugcgGCGCCgGgcGGCCCGGc -3'
miRNA:   3'- aacAGCUUG------UGCGGgUauUCGGGCCa -5'
12794 5' -55.2 NC_003387.1 + 9991 0.67 0.636291
Target:  5'- ---cCGAGCACGCCCugacGAGCaggucggcguugCCGGUa -3'
miRNA:   3'- aacaGCUUGUGCGGGua--UUCG------------GGCCA- -5'
12794 5' -55.2 NC_003387.1 + 13345 0.67 0.636291
Target:  5'- gUGUCGGGCAUGCUCGaAAGCaUUGGc -3'
miRNA:   3'- aACAGCUUGUGCGGGUaUUCG-GGCCa -5'
12794 5' -55.2 NC_003387.1 + 17796 0.69 0.493875
Target:  5'- aUGUCGGagcGCACGCCCGaGAGCaaagacgaGGUg -3'
miRNA:   3'- aACAGCU---UGUGCGGGUaUUCGgg------CCA- -5'
12794 5' -55.2 NC_003387.1 + 18486 0.67 0.591595
Target:  5'- -gGUCGAGCGC-CCCGaGGGCCUGc- -3'
miRNA:   3'- aaCAGCUUGUGcGGGUaUUCGGGCca -5'
12794 5' -55.2 NC_003387.1 + 20551 0.67 0.580486
Target:  5'- -cGUCGGcUGCGCCgAUAAcGCcCCGGUg -3'
miRNA:   3'- aaCAGCUuGUGCGGgUAUU-CG-GGCCA- -5'
12794 5' -55.2 NC_003387.1 + 23164 0.71 0.404193
Target:  5'- -aGUCGAGCAcccacaccucguCGCUCAU--GCCCGGUc -3'
miRNA:   3'- aaCAGCUUGU------------GCGGGUAuuCGGGCCA- -5'
12794 5' -55.2 NC_003387.1 + 23926 0.66 0.658656
Target:  5'- -cGUCGAGC-UGCCCGgcuGGCUCGa- -3'
miRNA:   3'- aaCAGCUUGuGCGGGUau-UCGGGCca -5'
12794 5' -55.2 NC_003387.1 + 26460 0.76 0.191295
Target:  5'- -gGUCGAGCACGCCCAUGcugaccaucagcacGGCgaucgCCGGg -3'
miRNA:   3'- aaCAGCUUGUGCGGGUAU--------------UCG-----GGCCa -5'
12794 5' -55.2 NC_003387.1 + 27882 0.67 0.60274
Target:  5'- -gGUCGAGCAggaGCCCGgccagccGCCCGaGUa -3'
miRNA:   3'- aaCAGCUUGUg--CGGGUauu----CGGGC-CA- -5'
12794 5' -55.2 NC_003387.1 + 28372 0.66 0.68867
Target:  5'- aUGUCGAugGCGCCUGgaucccauuugccuUGcuugcGCCCGGc -3'
miRNA:   3'- aACAGCUugUGCGGGU--------------AUu----CGGGCCa -5'
12794 5' -55.2 NC_003387.1 + 30061 0.66 0.658656
Target:  5'- ---aCGAGCGCGCCCugacGGCcgCCGGg -3'
miRNA:   3'- aacaGCUUGUGCGGGuau-UCG--GGCCa -5'
12794 5' -55.2 NC_003387.1 + 30186 0.68 0.536575
Target:  5'- -cGUCGAGC-CaGCCCuc-GGCCUGGg -3'
miRNA:   3'- aaCAGCUUGuG-CGGGuauUCGGGCCa -5'
12794 5' -55.2 NC_003387.1 + 30221 0.76 0.182593
Target:  5'- -cGUCGAGCGCGCCgCcgAGgccgucGCCCGGUa -3'
miRNA:   3'- aaCAGCUUGUGCGG-GuaUU------CGGGCCA- -5'
12794 5' -55.2 NC_003387.1 + 31138 0.66 0.646363
Target:  5'- -cGUCGGccucgcugaugccGCGCGCCU--GGGCCaCGGUc -3'
miRNA:   3'- aaCAGCU-------------UGUGCGGGuaUUCGG-GCCA- -5'
12794 5' -55.2 NC_003387.1 + 34570 0.66 0.647481
Target:  5'- -cGUCGAACucgaugccaacCGCCUugagguGCCCGGUg -3'
miRNA:   3'- aaCAGCUUGu----------GCGGGuauu--CGGGCCA- -5'
12794 5' -55.2 NC_003387.1 + 34685 0.68 0.547458
Target:  5'- -cGaCGAaaaACACG-CCGUGGGCCUGGUa -3'
miRNA:   3'- aaCaGCU---UGUGCgGGUAUUCGGGCCA- -5'
12794 5' -55.2 NC_003387.1 + 37842 0.69 0.483439
Target:  5'- -gGUCGGGCAC-CCC-UGcGCCCGGc -3'
miRNA:   3'- aaCAGCUUGUGcGGGuAUuCGGGCCa -5'
12794 5' -55.2 NC_003387.1 + 40122 0.67 0.591595
Target:  5'- aUGUCGA--GCGCCC---GGCCCGa- -3'
miRNA:   3'- aACAGCUugUGCGGGuauUCGGGCca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.