miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12795 3' -54.3 NC_003387.1 + 452 0.66 0.719279
Target:  5'- uGUCGCCGccGCgGCGGCCGAc--GG-CGAc -3'
miRNA:   3'- -CAGCGGC--UG-CGCCGGCUuuuUCaGUU- -5'
12795 3' -54.3 NC_003387.1 + 987 0.67 0.686304
Target:  5'- -cCGCCGAgGC-GCCGAccGGGGUCGGa -3'
miRNA:   3'- caGCGGCUgCGcCGGCUu-UUUCAGUU- -5'
12795 3' -54.3 NC_003387.1 + 1815 0.69 0.541549
Target:  5'- -cUGaCCGGCGCGGCCGAuauGG-CGAa -3'
miRNA:   3'- caGC-GGCUGCGCCGGCUuuuUCaGUU- -5'
12795 3' -54.3 NC_003387.1 + 2120 0.74 0.312806
Target:  5'- aUCGCCGACgccccaGCGGCCGAcguGGAGUUc- -3'
miRNA:   3'- cAGCGGCUG------CGCCGGCUu--UUUCAGuu -5'
12795 3' -54.3 NC_003387.1 + 2249 0.69 0.563492
Target:  5'- aGUUGCCGACGaccucgcgGGCCGG---GGUCGg -3'
miRNA:   3'- -CAGCGGCUGCg-------CCGGCUuuuUCAGUu -5'
12795 3' -54.3 NC_003387.1 + 2387 0.72 0.408239
Target:  5'- cGUUGCCGcGgGCGGCCuGAAuGAAGUCGGg -3'
miRNA:   3'- -CAGCGGC-UgCGCCGG-CUU-UUUCAGUU- -5'
12795 3' -54.3 NC_003387.1 + 4853 0.67 0.664032
Target:  5'- -aCGCCGAgaugGCGGCCGAgcaguucugGAAGGcCGAg -3'
miRNA:   3'- caGCGGCUg---CGCCGGCU---------UUUUCaGUU- -5'
12795 3' -54.3 NC_003387.1 + 5149 0.66 0.719279
Target:  5'- -gCGCuCGGCGcCGGUCGGugcAGUCAAu -3'
miRNA:   3'- caGCG-GCUGC-GCCGGCUuuuUCAGUU- -5'
12795 3' -54.3 NC_003387.1 + 5449 0.66 0.751447
Target:  5'- -gCGCCGACgGCGGCCaAAGcGGUg-- -3'
miRNA:   3'- caGCGGCUG-CGCCGGcUUUuUCAguu -5'
12795 3' -54.3 NC_003387.1 + 6137 0.66 0.730108
Target:  5'- -gUGCUGGCGacccugcccgaGGCCGAuuGGGUCGGu -3'
miRNA:   3'- caGCGGCUGCg----------CCGGCUuuUUCAGUU- -5'
12795 3' -54.3 NC_003387.1 + 6666 0.7 0.498596
Target:  5'- -aCGCCGACGCGG-CGAucGAGGUgAu -3'
miRNA:   3'- caGCGGCUGCGCCgGCUu-UUUCAgUu -5'
12795 3' -54.3 NC_003387.1 + 7855 0.66 0.718191
Target:  5'- aUCGCCGACGCccccgacggcuacGGCacCGAccuuGAGGUCGg -3'
miRNA:   3'- cAGCGGCUGCG-------------CCG--GCUu---UUUCAGUu -5'
12795 3' -54.3 NC_003387.1 + 13139 0.67 0.675189
Target:  5'- cUCGCUGguGCGCagcgcgaacaGGCCGucGAGGUCAGg -3'
miRNA:   3'- cAGCGGC--UGCG----------CCGGCuuUUUCAGUU- -5'
12795 3' -54.3 NC_003387.1 + 13188 0.68 0.630417
Target:  5'- --gGCCGACGCGaUCGAGAAgcgcggcaaGGUCAAc -3'
miRNA:   3'- cagCGGCUGCGCcGGCUUUU---------UCAGUU- -5'
12795 3' -54.3 NC_003387.1 + 13420 0.66 0.751447
Target:  5'- cUCGCCGuuGuCGGCCGggGGcuugccgucGUCGAg -3'
miRNA:   3'- cAGCGGCugC-GCCGGCuuUUu--------CAGUU- -5'
12795 3' -54.3 NC_003387.1 + 17245 0.71 0.437247
Target:  5'- -aCGCCGugGCGuGUCGAAAc-GUCGAu -3'
miRNA:   3'- caGCGGCugCGC-CGGCUUUuuCAGUU- -5'
12795 3' -54.3 NC_003387.1 + 19155 0.66 0.708361
Target:  5'- cUCGUCGACGCuGUCGAGGGcgcggcccgcacGGUCGc -3'
miRNA:   3'- cAGCGGCUGCGcCGGCUUUU------------UCAGUu -5'
12795 3' -54.3 NC_003387.1 + 20835 0.71 0.437247
Target:  5'- cGUCGCgCGACGuCGGCgaCGGGAuAGGUCAGc -3'
miRNA:   3'- -CAGCG-GCUGC-GCCG--GCUUU-UUCAGUU- -5'
12795 3' -54.3 NC_003387.1 + 21683 0.67 0.697365
Target:  5'- uUCGCCGACGCccuGGCCGccucGG-CGAg -3'
miRNA:   3'- cAGCGGCUGCG---CCGGCuuuuUCaGUU- -5'
12795 3' -54.3 NC_003387.1 + 26139 0.8 0.128148
Target:  5'- cGUCGCCGcucGCGCGGCCuGAccccgAGGAGUCAAc -3'
miRNA:   3'- -CAGCGGC---UGCGCCGG-CU-----UUUUCAGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.