miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12795 3' -54.3 NC_003387.1 + 26139 0.8 0.128148
Target:  5'- cGUCGCCGcucGCGCGGCCuGAccccgAGGAGUCAAc -3'
miRNA:   3'- -CAGCGGC---UGCGCCGG-CU-----UUUUCAGUU- -5'
12795 3' -54.3 NC_003387.1 + 4853 0.67 0.664032
Target:  5'- -aCGCCGAgaugGCGGCCGAgcaguucugGAAGGcCGAg -3'
miRNA:   3'- caGCGGCUg---CGCCGGCU---------UUUUCaGUU- -5'
12795 3' -54.3 NC_003387.1 + 52535 0.67 0.686304
Target:  5'- -cCGCCGAgcugGCGGCCGGGc--GUCAc -3'
miRNA:   3'- caGCGGCUg---CGCCGGCUUuuuCAGUu -5'
12795 3' -54.3 NC_003387.1 + 5449 0.66 0.751447
Target:  5'- -gCGCCGACgGCGGCCaAAGcGGUg-- -3'
miRNA:   3'- caGCGGCUG-CGCCGGcUUUuUCAguu -5'
12795 3' -54.3 NC_003387.1 + 35633 0.73 0.328828
Target:  5'- -cCGCCGAgGCGGCCGGGcgGG-CAc -3'
miRNA:   3'- caGCGGCUgCGCCGGCUUuuUCaGUu -5'
12795 3' -54.3 NC_003387.1 + 34354 0.72 0.389582
Target:  5'- -aCGUCGACGUGGUCGA---GGUCGg -3'
miRNA:   3'- caGCGGCUGCGCCGGCUuuuUCAGUu -5'
12795 3' -54.3 NC_003387.1 + 17245 0.71 0.437247
Target:  5'- -aCGCCGugGCGuGUCGAAAc-GUCGAu -3'
miRNA:   3'- caGCGGCugCGC-CGGCUUUuuCAGUU- -5'
12795 3' -54.3 NC_003387.1 + 6666 0.7 0.498596
Target:  5'- -aCGCCGACGCGG-CGAucGAGGUgAu -3'
miRNA:   3'- caGCGGCUGCGCCgGCUu-UUUCAgUu -5'
12795 3' -54.3 NC_003387.1 + 33476 0.69 0.552488
Target:  5'- aGUCGCCGAgGCGGUCGGcgcccgCGAu -3'
miRNA:   3'- -CAGCGGCUgCGCCGGCUuuuucaGUU- -5'
12795 3' -54.3 NC_003387.1 + 35561 0.67 0.657321
Target:  5'- -aCGCCGcgauggacuaccucgGCGCccuGGCCGAGcuGGUCGAc -3'
miRNA:   3'- caGCGGC---------------UGCG---CCGGCUUuuUCAGUU- -5'
12795 3' -54.3 NC_003387.1 + 13188 0.68 0.630417
Target:  5'- --gGCCGACGCGaUCGAGAAgcgcggcaaGGUCAAc -3'
miRNA:   3'- cagCGGCUGCGCcGGCUUUU---------UCAGUU- -5'
12795 3' -54.3 NC_003387.1 + 1815 0.69 0.541549
Target:  5'- -cUGaCCGGCGCGGCCGAuauGG-CGAa -3'
miRNA:   3'- caGC-GGCUGCGCCGGCUuuuUCaGUU- -5'
12795 3' -54.3 NC_003387.1 + 29688 0.79 0.143522
Target:  5'- -aCGUCGACGUGGCCGA---GGUCGAg -3'
miRNA:   3'- caGCGGCUGCGCCGGCUuuuUCAGUU- -5'
12795 3' -54.3 NC_003387.1 + 50979 0.68 0.630417
Target:  5'- --aGCCGAUaGCGGCCGggGgcGUUu- -3'
miRNA:   3'- cagCGGCUG-CGCCGGCuuUuuCAGuu -5'
12795 3' -54.3 NC_003387.1 + 41710 0.74 0.300419
Target:  5'- -gCGCCGACGaaggcggccggggcaCGGCCGAGGAcGUCAc -3'
miRNA:   3'- caGCGGCUGC---------------GCCGGCUUUUuCAGUu -5'
12795 3' -54.3 NC_003387.1 + 46354 0.7 0.509201
Target:  5'- cGUCGCC--CGCGGCCGAGGccAAGcgCGAc -3'
miRNA:   3'- -CAGCGGcuGCGCCGGCUUU--UUCa-GUU- -5'
12795 3' -54.3 NC_003387.1 + 28462 0.67 0.641635
Target:  5'- --aGCUGGCgGCGGCCcccGAGGUCAAg -3'
miRNA:   3'- cagCGGCUG-CGCCGGcuuUUUCAGUU- -5'
12795 3' -54.3 NC_003387.1 + 29237 0.67 0.664032
Target:  5'- -gCGCaCGAUccCGGCCGAcAAGGUCGAg -3'
miRNA:   3'- caGCG-GCUGc-GCCGGCUuUUUCAGUU- -5'
12795 3' -54.3 NC_003387.1 + 2120 0.74 0.312806
Target:  5'- aUCGCCGACgccccaGCGGCCGAcguGGAGUUc- -3'
miRNA:   3'- cAGCGGCUG------CGCCGGCUu--UUUCAGuu -5'
12795 3' -54.3 NC_003387.1 + 36119 0.71 0.437247
Target:  5'- --aGUCGACGCGGuUCGAGGucGUCGAg -3'
miRNA:   3'- cagCGGCUGCGCC-GGCUUUuuCAGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.