miRNA display CGI


Results 41 - 60 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12795 5' -63.3 NC_003387.1 + 19565 0.66 0.317198
Target:  5'- -cCUGUCGa-GUCGGCUgGCgaGCCUGCu -3'
miRNA:   3'- acGGCAGCggCAGCCGGgUG--CGGACG- -5'
12795 5' -63.3 NC_003387.1 + 13648 0.66 0.309874
Target:  5'- -aCCGUCGgCGgCGGCUCGguCGCCgaggGCg -3'
miRNA:   3'- acGGCAGCgGCaGCCGGGU--GCGGa---CG- -5'
12795 5' -63.3 NC_003387.1 + 4110 0.66 0.309874
Target:  5'- cGCCGU-GUacaaGUCGGCCgAcacCGCgCUGCg -3'
miRNA:   3'- aCGGCAgCGg---CAGCCGGgU---GCG-GACG- -5'
12795 5' -63.3 NC_003387.1 + 8197 0.66 0.309874
Target:  5'- cUGCgG-CGCCGggCGGCCCggcacgaacagACGCaaCUGCc -3'
miRNA:   3'- -ACGgCaGCGGCa-GCCGGG-----------UGCG--GACG- -5'
12795 5' -63.3 NC_003387.1 + 12305 0.66 0.309874
Target:  5'- gGCCGguUCGCCGUCG-CCgACGUaggucacgUGCa -3'
miRNA:   3'- aCGGC--AGCGGCAGCcGGgUGCGg-------ACG- -5'
12795 5' -63.3 NC_003387.1 + 41346 0.66 0.309874
Target:  5'- cGCCGaUCGCCGcaaacgaCGaCCCGgcCGUCUGCa -3'
miRNA:   3'- aCGGC-AGCGGCa------GCcGGGU--GCGGACG- -5'
12795 5' -63.3 NC_003387.1 + 30623 0.66 0.309874
Target:  5'- cGCCGgggauggCGCCGUaCGuGCCCcACGCgCUa- -3'
miRNA:   3'- aCGGCa------GCGGCA-GC-CGGG-UGCG-GAcg -5'
12795 5' -63.3 NC_003387.1 + 39532 0.66 0.309874
Target:  5'- uUGCCG-CGCuucucgaucgCGUCGGCCagguCGCGCUcgGCc -3'
miRNA:   3'- -ACGGCaGCG----------GCAGCCGG----GUGCGGa-CG- -5'
12795 5' -63.3 NC_003387.1 + 9911 0.66 0.309874
Target:  5'- cGCCGcCGUCGgggcUCGGCugCCAcCGCgUGCc -3'
miRNA:   3'- aCGGCaGCGGC----AGCCG--GGU-GCGgACG- -5'
12795 5' -63.3 NC_003387.1 + 5985 0.66 0.309874
Target:  5'- gGCCgGUUGCCGcCGuGCaucguccacucgCC-CGCCUGCu -3'
miRNA:   3'- aCGG-CAGCGGCaGC-CG------------GGuGCGGACG- -5'
12795 5' -63.3 NC_003387.1 + 27827 0.66 0.309149
Target:  5'- uUGCCGgUGCCGUCGGUggacagggcgcagCCAcCGCCcgagGUc -3'
miRNA:   3'- -ACGGCaGCGGCAGCCG-------------GGU-GCGGa---CG- -5'
12795 5' -63.3 NC_003387.1 + 39484 0.66 0.309149
Target:  5'- cGCagaUCGCUGUCGGCCUGCucggcgucggucaGCUUGUc -3'
miRNA:   3'- aCGgc-AGCGGCAGCCGGGUG-------------CGGACG- -5'
12795 5' -63.3 NC_003387.1 + 47470 0.66 0.30268
Target:  5'- gGCUGuugaguUCGCCGUCGGCCagCGgGUC-GCg -3'
miRNA:   3'- aCGGC------AGCGGCAGCCGG--GUgCGGaCG- -5'
12795 5' -63.3 NC_003387.1 + 6917 0.66 0.302679
Target:  5'- aGCCG-CGggacaUUGUCGGCCaucauCGCGgCCUGCg -3'
miRNA:   3'- aCGGCaGC-----GGCAGCCGG-----GUGC-GGACG- -5'
12795 5' -63.3 NC_003387.1 + 35805 0.67 0.295614
Target:  5'- gUGCCucggCGCCGUCGGCgCgAUGCuCUcGUa -3'
miRNA:   3'- -ACGGca--GCGGCAGCCG-GgUGCG-GA-CG- -5'
12795 5' -63.3 NC_003387.1 + 50762 0.67 0.295614
Target:  5'- gGUCGggUCGCgG-CGGuCCCAgccccaacCGCCUGCg -3'
miRNA:   3'- aCGGC--AGCGgCaGCC-GGGU--------GCGGACG- -5'
12795 5' -63.3 NC_003387.1 + 15921 0.67 0.295614
Target:  5'- gGCCGcgauuaUCggugagaagGCCGccCGGCCgacuCGCGCCUGCa -3'
miRNA:   3'- aCGGC------AG---------CGGCa-GCCGG----GUGCGGACG- -5'
12795 5' -63.3 NC_003387.1 + 47770 0.67 0.295614
Target:  5'- gGCCGcCGCC-UCGuucaucGUCCACaGCUUGCg -3'
miRNA:   3'- aCGGCaGCGGcAGC------CGGGUG-CGGACG- -5'
12795 5' -63.3 NC_003387.1 + 18351 0.67 0.295614
Target:  5'- cGuuGUCGCCGUUGGguuugccgaccucgaCCACGUcgacgucgaucggCUGCg -3'
miRNA:   3'- aCggCAGCGGCAGCCg--------------GGUGCG-------------GACG- -5'
12795 5' -63.3 NC_003387.1 + 3537 0.67 0.295614
Target:  5'- aGCaa-CGUCGaCGGCCgC-CGCCUGCg -3'
miRNA:   3'- aCGgcaGCGGCaGCCGG-GuGCGGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.