miRNA display CGI


Results 21 - 40 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12795 5' -63.3 NC_003387.1 + 5742 0.67 0.266696
Target:  5'- cGCuCGUCGUCGUC-GCCCGCauguagcggaaccgGCC-GCg -3'
miRNA:   3'- aCG-GCAGCGGCAGcCGGGUG--------------CGGaCG- -5'
12795 5' -63.3 NC_003387.1 + 5985 0.66 0.309874
Target:  5'- gGCCgGUUGCCGcCGuGCaucguccacucgCC-CGCCUGCu -3'
miRNA:   3'- aCGG-CAGCGGCaGC-CG------------GGuGCGGACG- -5'
12795 5' -63.3 NC_003387.1 + 6086 0.71 0.154332
Target:  5'- cGCCGgggCGUCGUCGGCaggcucgaACaCCUGCg -3'
miRNA:   3'- aCGGCa--GCGGCAGCCGgg------UGcGGACG- -5'
12795 5' -63.3 NC_003387.1 + 6391 0.68 0.249735
Target:  5'- cGCCuugCGUgGgCGGCCC-CGCUUGCc -3'
miRNA:   3'- aCGGca-GCGgCaGCCGGGuGCGGACG- -5'
12795 5' -63.3 NC_003387.1 + 6779 0.69 0.215232
Target:  5'- uUGCgCGg-GCCGUCGGCgaaCACGCUcggGCa -3'
miRNA:   3'- -ACG-GCagCGGCAGCCGg--GUGCGGa--CG- -5'
12795 5' -63.3 NC_003387.1 + 6879 0.71 0.14269
Target:  5'- cGCCgGUCGCCGUCguGGCaCCGgcUGCCUaguGCg -3'
miRNA:   3'- aCGG-CAGCGGCAG--CCG-GGU--GCGGA---CG- -5'
12795 5' -63.3 NC_003387.1 + 6917 0.66 0.302679
Target:  5'- aGCCG-CGggacaUUGUCGGCCaucauCGCGgCCUGCg -3'
miRNA:   3'- aCGGCaGC-----GGCAGCCGG-----GUGC-GGACG- -5'
12795 5' -63.3 NC_003387.1 + 7101 0.68 0.249735
Target:  5'- cGCC-UCGCCGUacGCCgACuCCUGCa -3'
miRNA:   3'- aCGGcAGCGGCAgcCGGgUGcGGACG- -5'
12795 5' -63.3 NC_003387.1 + 8086 0.71 0.15393
Target:  5'- cGCCGagGCCG-CGGCCagggccaCACGCUcGCg -3'
miRNA:   3'- aCGGCagCGGCaGCCGG-------GUGCGGaCG- -5'
12795 5' -63.3 NC_003387.1 + 8197 0.66 0.309874
Target:  5'- cUGCgG-CGCCGggCGGCCCggcacgaacagACGCaaCUGCc -3'
miRNA:   3'- -ACGgCaGCGGCa-GCCGGG-----------UGCG--GACG- -5'
12795 5' -63.3 NC_003387.1 + 9014 0.76 0.060897
Target:  5'- cGCCGUcgagcaccuggcgggCGCCGUCGGCgauCCACGCCa-- -3'
miRNA:   3'- aCGGCA---------------GCGGCAGCCG---GGUGCGGacg -5'
12795 5' -63.3 NC_003387.1 + 9464 0.68 0.255911
Target:  5'- cGCUcUUGCCGUUGGaCCCgGCGCCg-- -3'
miRNA:   3'- aCGGcAGCGGCAGCC-GGG-UGCGGacg -5'
12795 5' -63.3 NC_003387.1 + 9521 0.68 0.255911
Target:  5'- cGCCGaUCGCCGcguaccCGGCCa--GCCguUGCa -3'
miRNA:   3'- aCGGC-AGCGGCa-----GCCGGgugCGG--ACG- -5'
12795 5' -63.3 NC_003387.1 + 9615 0.71 0.157989
Target:  5'- cGCCG-CGCCGUCGcGCUCguacccgGCGCCcGUc -3'
miRNA:   3'- aCGGCaGCGGCAGC-CGGG-------UGCGGaCG- -5'
12795 5' -63.3 NC_003387.1 + 9911 0.66 0.309874
Target:  5'- cGCCGcCGUCGgggcUCGGCugCCAcCGCgUGCc -3'
miRNA:   3'- aCGGCaGCGGC----AGCCG--GGU-GCGgACG- -5'
12795 5' -63.3 NC_003387.1 + 10345 0.68 0.254045
Target:  5'- aGCCGUUGCg--CaGCCCGCacaugauccgcacgGCCUGCg -3'
miRNA:   3'- aCGGCAGCGgcaGcCGGGUG--------------CGGACG- -5'
12795 5' -63.3 NC_003387.1 + 10515 0.73 0.109469
Target:  5'- cGCCgGUCGCCGUCcugcucGCgCACGCCcGCc -3'
miRNA:   3'- aCGG-CAGCGGCAGc-----CGgGUGCGGaCG- -5'
12795 5' -63.3 NC_003387.1 + 10858 0.71 0.160055
Target:  5'- gGCCGUgcccgcucaucacgaCcGCCGUCGGCCgCugGCCgaccaggaUGCu -3'
miRNA:   3'- aCGGCA---------------G-CGGCAGCCGG-GugCGG--------ACG- -5'
12795 5' -63.3 NC_003387.1 + 11334 0.71 0.1584
Target:  5'- cGCCucgGUCGCCcggcgcUCGGCCuCACGCUcgGCg -3'
miRNA:   3'- aCGG---CAGCGGc-----AGCCGG-GUGCGGa-CG- -5'
12795 5' -63.3 NC_003387.1 + 11372 0.69 0.209895
Target:  5'- gGCCGggUCGUCGuuugcggcgaUCGGCgCCACGCUgGCc -3'
miRNA:   3'- aCGGC--AGCGGC----------AGCCG-GGUGCGGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.