miRNA display CGI


Results 1 - 20 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12795 5' -63.3 NC_003387.1 + 131 0.69 0.220685
Target:  5'- aUGCgGUCGCCcUCGcGaUCCGCGCC-GCc -3'
miRNA:   3'- -ACGgCAGCGGcAGC-C-GGGUGCGGaCG- -5'
12795 5' -63.3 NC_003387.1 + 451 0.68 0.255911
Target:  5'- cUGUCGcCGCCGcggCGGCCgACGgCgaccgGCg -3'
miRNA:   3'- -ACGGCaGCGGCa--GCCGGgUGCgGa----CG- -5'
12795 5' -63.3 NC_003387.1 + 735 0.66 0.317198
Target:  5'- gGCC-UgGCCGUCGGUgCGCGCgacgUGUg -3'
miRNA:   3'- aCGGcAgCGGCAGCCGgGUGCGg---ACG- -5'
12795 5' -63.3 NC_003387.1 + 1006 0.67 0.288678
Target:  5'- gGUCGgaugCGCUG-CGGCCuUGCGUUUGCg -3'
miRNA:   3'- aCGGCa---GCGGCaGCCGG-GUGCGGACG- -5'
12795 5' -63.3 NC_003387.1 + 1067 0.66 0.346999
Target:  5'- gGCCGU-GCUGUuuaagaaCGGCUCGCGCaucCUGUu -3'
miRNA:   3'- aCGGCAgCGGCA-------GCCGGGUGCG---GACG- -5'
12795 5' -63.3 NC_003387.1 + 1487 0.66 0.339948
Target:  5'- gGgCGUCGaCGUCGaGCaCCAgGCCgcgGCc -3'
miRNA:   3'- aCgGCAGCgGCAGC-CG-GGUgCGGa--CG- -5'
12795 5' -63.3 NC_003387.1 + 2042 0.71 0.153931
Target:  5'- cGCCGUCGCCGagcUGGCCgCgguggcgGCGCCaUGUu -3'
miRNA:   3'- aCGGCAGCGGCa--GCCGG-G-------UGCGG-ACG- -5'
12795 5' -63.3 NC_003387.1 + 2354 0.74 0.088262
Target:  5'- cGCCGUCGgCGUCGaGCgCCACGUacGCg -3'
miRNA:   3'- aCGGCAGCgGCAGC-CG-GGUGCGgaCG- -5'
12795 5' -63.3 NC_003387.1 + 2547 0.69 0.209895
Target:  5'- cGCgGUCGCCG-CGGCagauCCuCGCCgUGUa -3'
miRNA:   3'- aCGgCAGCGGCaGCCG----GGuGCGG-ACG- -5'
12795 5' -63.3 NC_003387.1 + 2578 0.76 0.067218
Target:  5'- cGCCGaC-CCGUCGGUCgACGCCUGg -3'
miRNA:   3'- aCGGCaGcGGCAGCCGGgUGCGGACg -5'
12795 5' -63.3 NC_003387.1 + 3537 0.67 0.295614
Target:  5'- aGCaa-CGUCGaCGGCCgC-CGCCUGCg -3'
miRNA:   3'- aCGgcaGCGGCaGCCGG-GuGCGGACG- -5'
12795 5' -63.3 NC_003387.1 + 3646 0.69 0.204673
Target:  5'- cGCCGUCGaCCGgcUCGuGCCC-CGgCUGa -3'
miRNA:   3'- aCGGCAGC-GGC--AGC-CGGGuGCgGACg -5'
12795 5' -63.3 NC_003387.1 + 3884 0.66 0.324652
Target:  5'- gUGCCGgaaccggCGCCG-CuGCCCGacccugacCGCCUGg -3'
miRNA:   3'- -ACGGCa------GCGGCaGcCGGGU--------GCGGACg -5'
12795 5' -63.3 NC_003387.1 + 4110 0.66 0.309874
Target:  5'- cGCCGU-GUacaaGUCGGCCgAcacCGCgCUGCg -3'
miRNA:   3'- aCGGCAgCGg---CAGCCGGgU---GCG-GACG- -5'
12795 5' -63.3 NC_003387.1 + 4237 0.66 0.332235
Target:  5'- -aUCGUUG-CGUCGGCgCCgcacaACGUCUGCg -3'
miRNA:   3'- acGGCAGCgGCAGCCG-GG-----UGCGGACG- -5'
12795 5' -63.3 NC_003387.1 + 4422 0.69 0.201594
Target:  5'- cGCCGagcugggcaaggcguUCGCCGa--GCCCGCGCCgaagGCc -3'
miRNA:   3'- aCGGC---------------AGCGGCagcCGGGUGCGGa---CG- -5'
12795 5' -63.3 NC_003387.1 + 4529 0.79 0.035003
Target:  5'- cGCCGcCGCCGgugcgggcaccuugCGGgCCUGCGCCUGCg -3'
miRNA:   3'- aCGGCaGCGGCa-------------GCC-GGGUGCGGACG- -5'
12795 5' -63.3 NC_003387.1 + 4656 0.68 0.249735
Target:  5'- gGCCcggCGCCaagCGGCCgACGCCgccaaGCa -3'
miRNA:   3'- aCGGca-GCGGca-GCCGGgUGCGGa----CG- -5'
12795 5' -63.3 NC_003387.1 + 4784 0.77 0.057006
Target:  5'- gGCCcacaCGgCGUCGuGCCCAUGCCUGCc -3'
miRNA:   3'- aCGGca--GCgGCAGC-CGGGUGCGGACG- -5'
12795 5' -63.3 NC_003387.1 + 5325 0.66 0.339948
Target:  5'- gGgCGggGCCgGUUGcCCCGCGCUUGCg -3'
miRNA:   3'- aCgGCagCGG-CAGCcGGGUGCGGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.