miRNA display CGI


Results 1 - 20 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12795 5' -63.3 NC_003387.1 + 41501 1.11 0.000121
Target:  5'- aUGCCGUCGCCGUCGGCCCACGCCUGCa -3'
miRNA:   3'- -ACGGCAGCGGCAGCCGGGUGCGGACG- -5'
12795 5' -63.3 NC_003387.1 + 30281 0.83 0.019232
Target:  5'- gGCCaaCGCCG-CGGCCCGCGCCUGg -3'
miRNA:   3'- aCGGcaGCGGCaGCCGGGUGCGGACg -5'
12795 5' -63.3 NC_003387.1 + 52262 0.8 0.032738
Target:  5'- cGCCgGUCGCCGUCGGCcgCCGCGgCgGCg -3'
miRNA:   3'- aCGG-CAGCGGCAGCCG--GGUGCgGaCG- -5'
12795 5' -63.3 NC_003387.1 + 4529 0.79 0.035003
Target:  5'- cGCCGcCGCCGgugcgggcaccuugCGGgCCUGCGCCUGCg -3'
miRNA:   3'- aCGGCaGCGGCa-------------GCC-GGGUGCGGACG- -5'
12795 5' -63.3 NC_003387.1 + 44612 0.77 0.053949
Target:  5'- cGCCGUCggGCCGUggcgcgagcgugUGGCCCugGCCgcgGCc -3'
miRNA:   3'- aCGGCAG--CGGCA------------GCCGGGugCGGa--CG- -5'
12795 5' -63.3 NC_003387.1 + 23002 0.77 0.055457
Target:  5'- aGCUGcCGUCGUCGGCCUggGCGCCgccgaGCg -3'
miRNA:   3'- aCGGCaGCGGCAGCCGGG--UGCGGa----CG- -5'
12795 5' -63.3 NC_003387.1 + 4784 0.77 0.057006
Target:  5'- gGCCcacaCGgCGUCGuGCCCAUGCCUGCc -3'
miRNA:   3'- aCGGca--GCgGCAGC-CGGGUGCGGACG- -5'
12795 5' -63.3 NC_003387.1 + 17027 0.76 0.060231
Target:  5'- cGUCGUCGCCGUaCGGCCCccacacgUGCCcGCu -3'
miRNA:   3'- aCGGCAGCGGCA-GCCGGGu------GCGGaCG- -5'
12795 5' -63.3 NC_003387.1 + 47923 0.76 0.060231
Target:  5'- uUGCCGUUgugGCCGUC-GCCgCGgGCCUGCg -3'
miRNA:   3'- -ACGGCAG---CGGCAGcCGG-GUgCGGACG- -5'
12795 5' -63.3 NC_003387.1 + 9014 0.76 0.060897
Target:  5'- cGCCGUcgagcaccuggcgggCGCCGUCGGCgauCCACGCCa-- -3'
miRNA:   3'- aCGGCA---------------GCGGCAGCCG---GGUGCGGacg -5'
12795 5' -63.3 NC_003387.1 + 11427 0.76 0.061909
Target:  5'- gUGCUGUCGUCGgugcUCGuGCCCGCG-CUGCa -3'
miRNA:   3'- -ACGGCAGCGGC----AGC-CGGGUGCgGACG- -5'
12795 5' -63.3 NC_003387.1 + 11725 0.76 0.063632
Target:  5'- gGCCGUcgaCGCCGaUCaGGCaCCAUGCUUGCg -3'
miRNA:   3'- aCGGCA---GCGGC-AG-CCG-GGUGCGGACG- -5'
12795 5' -63.3 NC_003387.1 + 44236 0.76 0.063632
Target:  5'- gUGCCGUCauaCCGUCauacCCCugGCCUGCa -3'
miRNA:   3'- -ACGGCAGc--GGCAGcc--GGGugCGGACG- -5'
12795 5' -63.3 NC_003387.1 + 17147 0.76 0.067034
Target:  5'- gGCUGUCaCCGgCGGCCCGCGCUgagcuggUGCg -3'
miRNA:   3'- aCGGCAGcGGCaGCCGGGUGCGG-------ACG- -5'
12795 5' -63.3 NC_003387.1 + 2578 0.76 0.067218
Target:  5'- cGCCGaC-CCGUCGGUCgACGCCUGg -3'
miRNA:   3'- aCGGCaGcGGCAGCCGGgUGCGGACg -5'
12795 5' -63.3 NC_003387.1 + 14697 0.75 0.072965
Target:  5'- cGCCGUCGCCGcgauccguugCGGUgCACGgCUUGCu -3'
miRNA:   3'- aCGGCAGCGGCa---------GCCGgGUGC-GGACG- -5'
12795 5' -63.3 NC_003387.1 + 19507 0.75 0.077055
Target:  5'- gGCCaUCGCCGagcgGGCCuCGCGCUUGCg -3'
miRNA:   3'- aCGGcAGCGGCag--CCGG-GUGCGGACG- -5'
12795 5' -63.3 NC_003387.1 + 44871 0.75 0.079182
Target:  5'- aGCCGUCGggggCGUCGGCgauUC-CGCCUGCg -3'
miRNA:   3'- aCGGCAGCg---GCAGCCG---GGuGCGGACG- -5'
12795 5' -63.3 NC_003387.1 + 33470 0.74 0.083604
Target:  5'- gGCCGaagUCGCCGaggCGGUCgGCGCCcGCg -3'
miRNA:   3'- aCGGC---AGCGGCa--GCCGGgUGCGGaCG- -5'
12795 5' -63.3 NC_003387.1 + 2354 0.74 0.088262
Target:  5'- cGCCGUCGgCGUCGaGCgCCACGUacGCg -3'
miRNA:   3'- aCGGCAGCgGCAGC-CG-GGUGCGgaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.