Results 1 - 20 of 204 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12795 | 5' | -63.3 | NC_003387.1 | + | 48825 | 0.66 | 0.347789 |
Target: 5'- cGCCGgucgUGCUGcUCGGCgCgACGCacgGCg -3' miRNA: 3'- aCGGCa---GCGGC-AGCCG-GgUGCGga-CG- -5' |
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12795 | 5' | -63.3 | NC_003387.1 | + | 37654 | 0.66 | 0.332235 |
Target: 5'- aG-CGUCGCCGUCacgaCCACGCCauccgguaauacUGCg -3' miRNA: 3'- aCgGCAGCGGCAGccg-GGUGCGG------------ACG- -5' |
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12795 | 5' | -63.3 | NC_003387.1 | + | 34963 | 0.66 | 0.332235 |
Target: 5'- gGCCGaCGCCGUgaugagcggugUGGCCCcugGCgGCCcgGCc -3' miRNA: 3'- aCGGCaGCGGCA-----------GCCGGG---UG-CGGa-CG- -5' |
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12795 | 5' | -63.3 | NC_003387.1 | + | 34161 | 0.66 | 0.332235 |
Target: 5'- gGgCGUCGCCcUCGGCCuUGCGCUc-- -3' miRNA: 3'- aCgGCAGCGGcAGCCGG-GUGCGGacg -5' |
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12795 | 5' | -63.3 | NC_003387.1 | + | 28784 | 0.66 | 0.324652 |
Target: 5'- cGCCGUgccCGCgGUCGaGCCa--GCCggGCa -3' miRNA: 3'- aCGGCA---GCGgCAGC-CGGgugCGGa-CG- -5' |
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12795 | 5' | -63.3 | NC_003387.1 | + | 30659 | 0.66 | 0.324652 |
Target: 5'- cGCCGUCGCCaaCGGUgCCGgugauCGCC-GCc -3' miRNA: 3'- aCGGCAGCGGcaGCCG-GGU-----GCGGaCG- -5' |
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12795 | 5' | -63.3 | NC_003387.1 | + | 50248 | 0.66 | 0.323901 |
Target: 5'- cGCCGUacgucagCGCCGggCGGUgCACcucgGCCUGg -3' miRNA: 3'- aCGGCA-------GCGGCa-GCCGgGUG----CGGACg -5' |
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12795 | 5' | -63.3 | NC_003387.1 | + | 23095 | 0.66 | 0.317198 |
Target: 5'- cGCCGUCGCgCGUgCGGUgCACcgaCUGa -3' miRNA: 3'- aCGGCAGCG-GCA-GCCGgGUGcg-GACg -5' |
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12795 | 5' | -63.3 | NC_003387.1 | + | 44395 | 0.66 | 0.317198 |
Target: 5'- gGUCGUCGagGUCGGCCgggccguagugaUGCGCC-GCg -3' miRNA: 3'- aCGGCAGCggCAGCCGG------------GUGCGGaCG- -5' |
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12795 | 5' | -63.3 | NC_003387.1 | + | 4237 | 0.66 | 0.332235 |
Target: 5'- -aUCGUUG-CGUCGGCgCCgcacaACGUCUGCg -3' miRNA: 3'- acGGCAGCgGCAGCCG-GG-----UGCGGACG- -5' |
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12795 | 5' | -63.3 | NC_003387.1 | + | 22118 | 0.66 | 0.332235 |
Target: 5'- uUGCCGUgCGUCGUgaugUGGCCgACGUacccGCa -3' miRNA: 3'- -ACGGCA-GCGGCA----GCCGGgUGCGga--CG- -5' |
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12795 | 5' | -63.3 | NC_003387.1 | + | 23305 | 0.66 | 0.332235 |
Target: 5'- gGCCGcUGCgG-CGGCCUccuccuGCGCCcgGCg -3' miRNA: 3'- aCGGCaGCGgCaGCCGGG------UGCGGa-CG- -5' |
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12795 | 5' | -63.3 | NC_003387.1 | + | 17557 | 0.66 | 0.347789 |
Target: 5'- -aCCGuUCGCgCGUCaGCCCGC-CCUcGCu -3' miRNA: 3'- acGGC-AGCG-GCAGcCGGGUGcGGA-CG- -5' |
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12795 | 5' | -63.3 | NC_003387.1 | + | 27983 | 0.66 | 0.347789 |
Target: 5'- gUGCCGUUGCgGcgcccucgauuUCGGCgagcaCGCGCUUGg -3' miRNA: 3'- -ACGGCAGCGgC-----------AGCCGg----GUGCGGACg -5' |
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12795 | 5' | -63.3 | NC_003387.1 | + | 15489 | 0.66 | 0.347789 |
Target: 5'- aGCuCGUCGaaauCGUC-GCCCACGgCgGCg -3' miRNA: 3'- aCG-GCAGCg---GCAGcCGGGUGCgGaCG- -5' |
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12795 | 5' | -63.3 | NC_003387.1 | + | 51043 | 0.66 | 0.339948 |
Target: 5'- cGCCGcCGCgGUgucgguacCGGCCCACaCCUc- -3' miRNA: 3'- aCGGCaGCGgCA--------GCCGGGUGcGGAcg -5' |
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12795 | 5' | -63.3 | NC_003387.1 | + | 50971 | 0.66 | 0.339948 |
Target: 5'- cGCCGcCGCCG--GGCUCAUGCUg-- -3' miRNA: 3'- aCGGCaGCGGCagCCGGGUGCGGacg -5' |
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12795 | 5' | -63.3 | NC_003387.1 | + | 39875 | 0.66 | 0.339948 |
Target: 5'- gGCC--CGCCGgugCGGUguCCACGCC-GCc -3' miRNA: 3'- aCGGcaGCGGCa--GCCG--GGUGCGGaCG- -5' |
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12795 | 5' | -63.3 | NC_003387.1 | + | 1487 | 0.66 | 0.339948 |
Target: 5'- gGgCGUCGaCGUCGaGCaCCAgGCCgcgGCc -3' miRNA: 3'- aCgGCAGCgGCAGC-CG-GGUgCGGa--CG- -5' |
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12795 | 5' | -63.3 | NC_003387.1 | + | 5325 | 0.66 | 0.339948 |
Target: 5'- gGgCGggGCCgGUUGcCCCGCGCUUGCg -3' miRNA: 3'- aCgGCagCGG-CAGCcGGGUGCGGACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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