miRNA display CGI


Results 1 - 20 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12795 5' -63.3 NC_003387.1 + 30281 0.83 0.019232
Target:  5'- gGCCaaCGCCG-CGGCCCGCGCCUGg -3'
miRNA:   3'- aCGGcaGCGGCaGCCGGGUGCGGACg -5'
12795 5' -63.3 NC_003387.1 + 29426 0.7 0.180225
Target:  5'- gGCCGcCGCag-CGGCCCGCGCggucGCu -3'
miRNA:   3'- aCGGCaGCGgcaGCCGGGUGCGga--CG- -5'
12795 5' -63.3 NC_003387.1 + 49814 0.69 0.204673
Target:  5'- aGCC-UCGcCCG-CGGCCUgccGCGCCcgGCg -3'
miRNA:   3'- aCGGcAGC-GGCaGCCGGG---UGCGGa-CG- -5'
12795 5' -63.3 NC_003387.1 + 48825 0.66 0.347789
Target:  5'- cGCCGgucgUGCUGcUCGGCgCgACGCacgGCg -3'
miRNA:   3'- aCGGCa---GCGGC-AGCCG-GgUGCGga-CG- -5'
12795 5' -63.3 NC_003387.1 + 17147 0.76 0.067034
Target:  5'- gGCUGUCaCCGgCGGCCCGCGCUgagcuggUGCg -3'
miRNA:   3'- aCGGCAGcGGCaGCCGGGUGCGG-------ACG- -5'
12795 5' -63.3 NC_003387.1 + 2578 0.76 0.067218
Target:  5'- cGCCGaC-CCGUCGGUCgACGCCUGg -3'
miRNA:   3'- aCGGCaGcGGCAGCCGGgUGCGGACg -5'
12795 5' -63.3 NC_003387.1 + 45942 0.74 0.093166
Target:  5'- aGCgUGuUCGCCGaCGGCCCGCGCaaggGCg -3'
miRNA:   3'- aCG-GC-AGCGGCaGCCGGGUGCGga--CG- -5'
12795 5' -63.3 NC_003387.1 + 50428 0.72 0.115474
Target:  5'- -aUCGUCGCC-UCGGCgUACGCCaGCg -3'
miRNA:   3'- acGGCAGCGGcAGCCGgGUGCGGaCG- -5'
12795 5' -63.3 NC_003387.1 + 38603 0.72 0.135381
Target:  5'- gUGCCGgugaucgaggCGCUGuUCGGCCCGCagGCC-GCg -3'
miRNA:   3'- -ACGGCa---------GCGGC-AGCCGGGUG--CGGaCG- -5'
12795 5' -63.3 NC_003387.1 + 26706 0.7 0.180225
Target:  5'- cGUCGaCGCCGUCGuGCgCgGCGCgaGCu -3'
miRNA:   3'- aCGGCaGCGGCAGC-CG-GgUGCGgaCG- -5'
12795 5' -63.3 NC_003387.1 + 30233 0.71 0.146479
Target:  5'- cGCCGagGCCGUC-GCCCgguacgACGCC-GCg -3'
miRNA:   3'- aCGGCagCGGCAGcCGGG------UGCGGaCG- -5'
12795 5' -63.3 NC_003387.1 + 46901 0.72 0.125061
Target:  5'- aGCCcggGUCGUCGUgcaCGGCCgCACGCUUGa -3'
miRNA:   3'- aCGG---CAGCGGCA---GCCGG-GUGCGGACg -5'
12795 5' -63.3 NC_003387.1 + 44612 0.77 0.053949
Target:  5'- cGCCGUCggGCCGUggcgcgagcgugUGGCCCugGCCgcgGCc -3'
miRNA:   3'- aCGGCAG--CGGCA------------GCCGGGugCGGa--CG- -5'
12795 5' -63.3 NC_003387.1 + 2042 0.71 0.153931
Target:  5'- cGCCGUCGCCGagcUGGCCgCgguggcgGCGCCaUGUu -3'
miRNA:   3'- aCGGCAGCGGCa--GCCGG-G-------UGCGG-ACG- -5'
12795 5' -63.3 NC_003387.1 + 11427 0.76 0.061909
Target:  5'- gUGCUGUCGUCGgugcUCGuGCCCGCG-CUGCa -3'
miRNA:   3'- -ACGGCAGCGGC----AGC-CGGGUGCgGACG- -5'
12795 5' -63.3 NC_003387.1 + 21697 0.72 0.125061
Target:  5'- gGCCGccUCGgCGagcgCGGCCCGCGCCg-- -3'
miRNA:   3'- aCGGC--AGCgGCa---GCCGGGUGCGGacg -5'
12795 5' -63.3 NC_003387.1 + 30557 0.7 0.162565
Target:  5'- gGaCCGcCGCCG-CGGCCgguaCGCGCCgUGCc -3'
miRNA:   3'- aC-GGCaGCGGCaGCCGG----GUGCGG-ACG- -5'
12795 5' -63.3 NC_003387.1 + 4422 0.69 0.201594
Target:  5'- cGCCGagcugggcaaggcguUCGCCGa--GCCCGCGCCgaagGCc -3'
miRNA:   3'- aCGGC---------------AGCGGCagcCGGGUGCGGa---CG- -5'
12795 5' -63.3 NC_003387.1 + 44236 0.76 0.063632
Target:  5'- gUGCCGUCauaCCGUCauacCCCugGCCUGCa -3'
miRNA:   3'- -ACGGCAGc--GGCAGcc--GGGugCGGACG- -5'
12795 5' -63.3 NC_003387.1 + 33470 0.74 0.083604
Target:  5'- gGCCGaagUCGCCGaggCGGUCgGCGCCcGCg -3'
miRNA:   3'- aCGGC---AGCGGCa--GCCGGgUGCGGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.