miRNA display CGI


Results 41 - 60 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12796 5' -58.6 NC_003387.1 + 43354 0.66 0.501452
Target:  5'- gGGUcGCCuCGGCCGCcacCGGCuCGUCGaCGu -3'
miRNA:   3'- aCUA-CGG-GCUGGUGu--GCCG-GUAGC-GC- -5'
12796 5' -58.6 NC_003387.1 + 40163 0.66 0.501451
Target:  5'- gGcgGCCCGAUCGuCGuCGaGCCcUCGCa -3'
miRNA:   3'- aCuaCGGGCUGGU-GU-GC-CGGuAGCGc -5'
12796 5' -58.6 NC_003387.1 + 38488 0.66 0.501451
Target:  5'- ---gGCCCGAUCccgaGCGGCCGUgggcgUGCGa -3'
miRNA:   3'- acuaCGGGCUGGug--UGCCGGUA-----GCGC- -5'
12796 5' -58.6 NC_003387.1 + 24856 0.67 0.491328
Target:  5'- --cUGCUCGACCGCGcCGGUgucgAUCGUGg -3'
miRNA:   3'- acuACGGGCUGGUGU-GCCGg---UAGCGC- -5'
12796 5' -58.6 NC_003387.1 + 16077 0.67 0.491328
Target:  5'- gUGAUGCCacucggGGgCGCcguCGGgCAUCGCGg -3'
miRNA:   3'- -ACUACGGg-----CUgGUGu--GCCgGUAGCGC- -5'
12796 5' -58.6 NC_003387.1 + 7799 0.67 0.491327
Target:  5'- aGGUGCaggCCGagcugcaacGCCugGCGGCCgagGUCGCc -3'
miRNA:   3'- aCUACG---GGC---------UGGugUGCCGG---UAGCGc -5'
12796 5' -58.6 NC_003387.1 + 42517 0.67 0.491327
Target:  5'- cUGGgcgaCCGAUCACGCGGCC--CGCa -3'
miRNA:   3'- -ACUacg-GGCUGGUGUGCCGGuaGCGc -5'
12796 5' -58.6 NC_003387.1 + 27224 0.67 0.491327
Target:  5'- cGGUcGaCCCGGCCgagcugacacGCGCGGUCGagGCGg -3'
miRNA:   3'- aCUA-C-GGGCUGG----------UGUGCCGGUagCGC- -5'
12796 5' -58.6 NC_003387.1 + 45569 0.67 0.491327
Target:  5'- ---aGCUCGuCgGCACGGCCGaggagccgggccUCGCGu -3'
miRNA:   3'- acuaCGGGCuGgUGUGCCGGU------------AGCGC- -5'
12796 5' -58.6 NC_003387.1 + 17095 0.67 0.485299
Target:  5'- ---cGCCCGGCCGCcucggcgggcuccucGgGGCCGUagGCGa -3'
miRNA:   3'- acuaCGGGCUGGUG---------------UgCCGGUAg-CGC- -5'
12796 5' -58.6 NC_003387.1 + 31171 0.67 0.481299
Target:  5'- cGGucUGCaCGACgACGCGGgCGUCGCc -3'
miRNA:   3'- aCU--ACGgGCUGgUGUGCCgGUAGCGc -5'
12796 5' -58.6 NC_003387.1 + 22284 0.67 0.481299
Target:  5'- -cGUGCUCGGCCACcgccuCGGCC-UCGg- -3'
miRNA:   3'- acUACGGGCUGGUGu----GCCGGuAGCgc -5'
12796 5' -58.6 NC_003387.1 + 10356 0.67 0.481299
Target:  5'- ---aGCCCGcacaugauCCGCACGGCC--UGCGu -3'
miRNA:   3'- acuaCGGGCu-------GGUGUGCCGGuaGCGC- -5'
12796 5' -58.6 NC_003387.1 + 37792 0.67 0.481299
Target:  5'- gGAUGCgCCGcugcgccgguaGCCGCGCaGCCGUCaCGu -3'
miRNA:   3'- aCUACG-GGC-----------UGGUGUGcCGGUAGcGC- -5'
12796 5' -58.6 NC_003387.1 + 7769 0.67 0.481299
Target:  5'- ---gGCCUGAgC-CGCGGCCugagccuUCGCGa -3'
miRNA:   3'- acuaCGGGCUgGuGUGCCGGu------AGCGC- -5'
12796 5' -58.6 NC_003387.1 + 27243 0.67 0.481299
Target:  5'- aGGUcGCCCGacaggaugcGCCGCAUGaGCCGcgaCGCGg -3'
miRNA:   3'- aCUA-CGGGC---------UGGUGUGC-CGGUa--GCGC- -5'
12796 5' -58.6 NC_003387.1 + 43856 0.67 0.481299
Target:  5'- cGGUGCaCCaguGCUAUAUcgcgugGGCCAUCGCGc -3'
miRNA:   3'- aCUACG-GGc--UGGUGUG------CCGGUAGCGC- -5'
12796 5' -58.6 NC_003387.1 + 17480 0.67 0.47533
Target:  5'- cGAU-CCCGGCgGCAUGGCCGcgacuauggaaaugaUCGaCGa -3'
miRNA:   3'- aCUAcGGGCUGgUGUGCCGGU---------------AGC-GC- -5'
12796 5' -58.6 NC_003387.1 + 322 0.67 0.471371
Target:  5'- cGA-GCCCGGCgACACGcacGCCAagaucCGCGu -3'
miRNA:   3'- aCUaCGGGCUGgUGUGC---CGGUa----GCGC- -5'
12796 5' -58.6 NC_003387.1 + 15933 0.67 0.471371
Target:  5'- cGGUGagaaGGCCGCcCGGCCGacUCGCGc -3'
miRNA:   3'- aCUACggg-CUGGUGuGCCGGU--AGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.