miRNA display CGI


Results 21 - 40 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12796 5' -58.6 NC_003387.1 + 8054 0.68 0.387172
Target:  5'- --cUGCUCGACgagCugGCGGCCcgCGCu -3'
miRNA:   3'- acuACGGGCUG---GugUGCCGGuaGCGc -5'
12796 5' -58.6 NC_003387.1 + 8881 0.66 0.532346
Target:  5'- cUGGUGCaccgccCCGACCu--CGGCC-UCGCc -3'
miRNA:   3'- -ACUACG------GGCUGGuguGCCGGuAGCGc -5'
12796 5' -58.6 NC_003387.1 + 9505 0.66 0.553317
Target:  5'- cGAguacCCCGACgGCACgaccguGGCCGUCaaGCGg -3'
miRNA:   3'- aCUac--GGGCUGgUGUG------CCGGUAG--CGC- -5'
12796 5' -58.6 NC_003387.1 + 10356 0.67 0.481299
Target:  5'- ---aGCCCGcacaugauCCGCACGGCC--UGCGu -3'
miRNA:   3'- acuaCGGGCu-------GGUGUGCCGGuaGCGC- -5'
12796 5' -58.6 NC_003387.1 + 10692 0.69 0.353061
Target:  5'- uUGgcGCCCuggcgcucggcGACCAuCACGGCCAg-GCGg -3'
miRNA:   3'- -ACuaCGGG-----------CUGGU-GUGCCGGUagCGC- -5'
12796 5' -58.6 NC_003387.1 + 11573 0.66 0.542798
Target:  5'- ---cGCCCuGACacuCGCAgCGGCCGUCgGCGc -3'
miRNA:   3'- acuaCGGG-CUG---GUGU-GCCGGUAG-CGC- -5'
12796 5' -58.6 NC_003387.1 + 11821 0.67 0.451834
Target:  5'- ---cGCCCGAgCCGCgaucGCGGCCuugauuagGUCGCc -3'
miRNA:   3'- acuaCGGGCU-GGUG----UGCCGG--------UAGCGc -5'
12796 5' -58.6 NC_003387.1 + 12008 0.66 0.521966
Target:  5'- cGcgGCCUGGuCgACACGGCgCAU-GCGg -3'
miRNA:   3'- aCuaCGGGCU-GgUGUGCCG-GUAgCGC- -5'
12796 5' -58.6 NC_003387.1 + 12215 0.8 0.062756
Target:  5'- cGGUGCCgGGCCAC-CGGCgGUCGCc -3'
miRNA:   3'- aCUACGGgCUGGUGuGCCGgUAGCGc -5'
12796 5' -58.6 NC_003387.1 + 12464 0.68 0.387172
Target:  5'- gGcgGCCUGGCCGCG-GGCC-UgGCGu -3'
miRNA:   3'- aCuaCGGGCUGGUGUgCCGGuAgCGC- -5'
12796 5' -58.6 NC_003387.1 + 13519 0.68 0.396032
Target:  5'- --cUGCCCGACCGCGgGGgCCugGUCGa- -3'
miRNA:   3'- acuACGGGCUGGUGUgCC-GG--UAGCgc -5'
12796 5' -58.6 NC_003387.1 + 13629 0.67 0.460571
Target:  5'- gGGUGaguucaaCCCGGCCACcgucggcgGCGGCUcgGUCGCc -3'
miRNA:   3'- aCUAC-------GGGCUGGUG--------UGCCGG--UAGCGc -5'
12796 5' -58.6 NC_003387.1 + 13644 0.68 0.405022
Target:  5'- cGAacgGCCCGACCGCGacgUGGUCAacCGUGa -3'
miRNA:   3'- aCUa--CGGGCUGGUGU---GCCGGUa-GCGC- -5'
12796 5' -58.6 NC_003387.1 + 14079 0.68 0.432748
Target:  5'- uUGAUGCgCCGgaacugcagcGCCAgCGCGGCC--UGCGg -3'
miRNA:   3'- -ACUACG-GGC----------UGGU-GUGCCGGuaGCGC- -5'
12796 5' -58.6 NC_003387.1 + 14634 0.67 0.470384
Target:  5'- aGGUGCCCGucagGCCGCcgcgcacagugacGCGGCgcUCGCu -3'
miRNA:   3'- aCUACGGGC----UGGUG-------------UGCCGguAGCGc -5'
12796 5' -58.6 NC_003387.1 + 14808 0.69 0.378443
Target:  5'- cGGUGCCgaGCCACGCGGgCAgcgggUCGCc -3'
miRNA:   3'- aCUACGGgcUGGUGUGCCgGU-----AGCGc -5'
12796 5' -58.6 NC_003387.1 + 14894 0.81 0.051421
Target:  5'- gGGUGCCCGACCucGCuCGGCCcgAUCGCGc -3'
miRNA:   3'- aCUACGGGCUGG--UGuGCCGG--UAGCGC- -5'
12796 5' -58.6 NC_003387.1 + 15700 0.72 0.24466
Target:  5'- -cGUGCCCGGCCAUAU--CCAUUGCGu -3'
miRNA:   3'- acUACGGGCUGGUGUGccGGUAGCGC- -5'
12796 5' -58.6 NC_003387.1 + 15773 0.66 0.510641
Target:  5'- cGGUGUUCGACCAguCGcGCUuuagcgugaucauGUCGCGc -3'
miRNA:   3'- aCUACGGGCUGGUguGC-CGG-------------UAGCGC- -5'
12796 5' -58.6 NC_003387.1 + 15933 0.67 0.471371
Target:  5'- cGGUGagaaGGCCGCcCGGCCGacUCGCGc -3'
miRNA:   3'- aCUACggg-CUGGUGuGCCGGU--AGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.