miRNA display CGI


Results 1 - 20 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12796 5' -58.6 NC_003387.1 + 112 0.68 0.432748
Target:  5'- cUGAUGCgCGcCCGCcucgauGCGGUCGcccUCGCGa -3'
miRNA:   3'- -ACUACGgGCuGGUG------UGCCGGU---AGCGC- -5'
12796 5' -58.6 NC_003387.1 + 186 0.76 0.1293
Target:  5'- gUGAcGCCCGGCCGCcagcucgGCGGCUugucgcucuuGUCGCGg -3'
miRNA:   3'- -ACUaCGGGCUGGUG-------UGCCGG----------UAGCGC- -5'
12796 5' -58.6 NC_003387.1 + 188 0.66 0.542798
Target:  5'- cGGUGCUCGACU---CGGCC--CGCGa -3'
miRNA:   3'- aCUACGGGCUGGuguGCCGGuaGCGC- -5'
12796 5' -58.6 NC_003387.1 + 322 0.67 0.471371
Target:  5'- cGA-GCCCGGCgACACGcacGCCAagaucCGCGu -3'
miRNA:   3'- aCUaCGGGCUGgUGUGC---CGGUa----GCGC- -5'
12796 5' -58.6 NC_003387.1 + 499 0.67 0.461547
Target:  5'- cGAUGCgCGcCCGCGUGGCgAcCGCGg -3'
miRNA:   3'- aCUACGgGCuGGUGUGCCGgUaGCGC- -5'
12796 5' -58.6 NC_003387.1 + 750 0.66 0.521966
Target:  5'- gGAUGCggUCGGCCAcCGCGGCa---GCGa -3'
miRNA:   3'- aCUACG--GGCUGGU-GUGCCGguagCGC- -5'
12796 5' -58.6 NC_003387.1 + 1807 0.67 0.461547
Target:  5'- aGGUGaagCUGACCgGCGCGGCCGauaUgGCGa -3'
miRNA:   3'- aCUACg--GGCUGG-UGUGCCGGU---AgCGC- -5'
12796 5' -58.6 NC_003387.1 + 3339 0.68 0.423382
Target:  5'- cGAgGCCCG-CUcguuugGCGCGGUCGUCGaCGg -3'
miRNA:   3'- aCUaCGGGCuGG------UGUGCCGGUAGC-GC- -5'
12796 5' -58.6 NC_003387.1 + 3926 0.7 0.321131
Target:  5'- cGAUGgCCG-CCGcCGCGGCgAUCaGCGg -3'
miRNA:   3'- aCUACgGGCuGGU-GUGCCGgUAG-CGC- -5'
12796 5' -58.6 NC_003387.1 + 4169 0.68 0.396032
Target:  5'- cGGUGCCaGACCGCaACGGCuCGUaucaGCc -3'
miRNA:   3'- aCUACGGgCUGGUG-UGCCG-GUAg---CGc -5'
12796 5' -58.6 NC_003387.1 + 4565 0.69 0.353061
Target:  5'- --cUGCgCGACCGCGCGGgCCucgguggCGCGc -3'
miRNA:   3'- acuACGgGCUGGUGUGCC-GGua-----GCGC- -5'
12796 5' -58.6 NC_003387.1 + 4650 0.67 0.451833
Target:  5'- gGAcaagGCCCGgcGCCAaGCGGCCGaCGCc -3'
miRNA:   3'- aCUa---CGGGC--UGGUgUGCCGGUaGCGc -5'
12796 5' -58.6 NC_003387.1 + 4773 0.69 0.336821
Target:  5'- cGGUGCUucgCGGcCCACACGGC-GUCGUGc -3'
miRNA:   3'- aCUACGG---GCU-GGUGUGCCGgUAGCGC- -5'
12796 5' -58.6 NC_003387.1 + 5541 0.68 0.39514
Target:  5'- cUGA-GCCCcgagggcGACCAcCAgGGCCAcCGCGg -3'
miRNA:   3'- -ACUaCGGG-------CUGGU-GUgCCGGUaGCGC- -5'
12796 5' -58.6 NC_003387.1 + 5802 0.74 0.183936
Target:  5'- cGGUGCCCGGCUcaaGCguGCGGCCGU-GCa -3'
miRNA:   3'- aCUACGGGCUGG---UG--UGCCGGUAgCGc -5'
12796 5' -58.6 NC_003387.1 + 7184 0.74 0.173974
Target:  5'- gGAUcGCCUuGCCGCACGGCCAgcacaccgucagcUCGCu -3'
miRNA:   3'- aCUA-CGGGcUGGUGUGCCGGU-------------AGCGc -5'
12796 5' -58.6 NC_003387.1 + 7442 0.7 0.291412
Target:  5'- aGAUGCCCGcCCgACGgGGUCggCGUGg -3'
miRNA:   3'- aCUACGGGCuGG-UGUgCCGGuaGCGC- -5'
12796 5' -58.6 NC_003387.1 + 7745 0.71 0.284327
Target:  5'- ---cGCCuCGGCgGCAgCGGCgAUCGCGg -3'
miRNA:   3'- acuaCGG-GCUGgUGU-GCCGgUAGCGC- -5'
12796 5' -58.6 NC_003387.1 + 7769 0.67 0.481299
Target:  5'- ---gGCCUGAgC-CGCGGCCugagccuUCGCGa -3'
miRNA:   3'- acuaCGGGCUgGuGUGCCGGu------AGCGC- -5'
12796 5' -58.6 NC_003387.1 + 7799 0.67 0.491327
Target:  5'- aGGUGCaggCCGagcugcaacGCCugGCGGCCgagGUCGCc -3'
miRNA:   3'- aCUACG---GGC---------UGGugUGCCGG---UAGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.