miRNA display CGI


Results 1 - 20 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12796 5' -58.6 NC_003387.1 + 32243 0.77 0.109945
Target:  5'- cGAgcUGgCCGACCGCcUGGCCGUCGCc -3'
miRNA:   3'- aCU--ACgGGCUGGUGuGCCGGUAGCGc -5'
12796 5' -58.6 NC_003387.1 + 45934 0.69 0.353061
Target:  5'- -cGUGCCCGAgcguguUCGCcgACGGCCcgCGCa -3'
miRNA:   3'- acUACGGGCU------GGUG--UGCCGGuaGCGc -5'
12796 5' -58.6 NC_003387.1 + 29423 0.69 0.378443
Target:  5'- gGA-GgCCG-CCGCAgCGGCCcgCGCGg -3'
miRNA:   3'- aCUaCgGGCuGGUGU-GCCGGuaGCGC- -5'
12796 5' -58.6 NC_003387.1 + 35625 0.66 0.553317
Target:  5'- cGAggaGCCCG-CCGagGCGGCCGg-GCGg -3'
miRNA:   3'- aCUa--CGGGCuGGUg-UGCCGGUagCGC- -5'
12796 5' -58.6 NC_003387.1 + 45198 0.74 0.165379
Target:  5'- gUGuUGCCCGGCCcguucgaccCGCGGCCgAUCGUGg -3'
miRNA:   3'- -ACuACGGGCUGGu--------GUGCCGG-UAGCGC- -5'
12796 5' -58.6 NC_003387.1 + 50770 0.74 0.174437
Target:  5'- cGcUGCCCGGCCAgaccCGCGGCCGgaucaugCGCu -3'
miRNA:   3'- aCuACGGGCUGGU----GUGCCGGUa------GCGc -5'
12796 5' -58.6 NC_003387.1 + 45395 0.73 0.204309
Target:  5'- ---cGCCCGGCCGCcCGaGCCgAUCGUGa -3'
miRNA:   3'- acuaCGGGCUGGUGuGC-CGG-UAGCGC- -5'
12796 5' -58.6 NC_003387.1 + 39565 0.72 0.220847
Target:  5'- cGA-GCCUGACCuCgACGGCCuguUCGCGc -3'
miRNA:   3'- aCUaCGGGCUGGuG-UGCCGGu--AGCGC- -5'
12796 5' -58.6 NC_003387.1 + 30924 0.71 0.270566
Target:  5'- ---cGUCgGGCUGCAcCGGCCGUCGCa -3'
miRNA:   3'- acuaCGGgCUGGUGU-GCCGGUAGCGc -5'
12796 5' -58.6 NC_003387.1 + 48771 0.7 0.303034
Target:  5'- cGGUGCUCGgcgcagccagcucGCCGCugaucgccgcggcgGCGGCCAUCGUc -3'
miRNA:   3'- aCUACGGGC-------------UGGUG--------------UGCCGGUAGCGc -5'
12796 5' -58.6 NC_003387.1 + 48195 0.71 0.284326
Target:  5'- aGGUGCCCGcACCgGCggcgGCGGCCGagGUGa -3'
miRNA:   3'- aCUACGGGC-UGG-UG----UGCCGGUagCGC- -5'
12796 5' -58.6 NC_003387.1 + 43945 0.71 0.257346
Target:  5'- aGGUcGCCCGccGCCGCACGGCgaaggcccgCAUgGCGa -3'
miRNA:   3'- aCUA-CGGGC--UGGUGUGCCG---------GUAgCGC- -5'
12796 5' -58.6 NC_003387.1 + 44776 0.75 0.14852
Target:  5'- aGcgGCCCGACCucgACAagcUGGCCcgCGCGa -3'
miRNA:   3'- aCuaCGGGCUGG---UGU---GCCGGuaGCGC- -5'
12796 5' -58.6 NC_003387.1 + 52005 0.71 0.284326
Target:  5'- --cUGCCCGACCuguCGGCCcUCGaCGa -3'
miRNA:   3'- acuACGGGCUGGuguGCCGGuAGC-GC- -5'
12796 5' -58.6 NC_003387.1 + 32320 0.75 0.152582
Target:  5'- cGAUGCCCGAcauggaCCGCuGCGGCUgAUCGCc -3'
miRNA:   3'- aCUACGGGCU------GGUG-UGCCGG-UAGCGc -5'
12796 5' -58.6 NC_003387.1 + 51866 0.72 0.24466
Target:  5'- cGGUgGCCCcgguGAUCGCgaaGGCCGUCGCGa -3'
miRNA:   3'- aCUA-CGGG----CUGGUGug-CCGGUAGCGC- -5'
12796 5' -58.6 NC_003387.1 + 21688 0.7 0.298634
Target:  5'- cGAcGCCCuGGCCgccucggcgaGCGCGGCCcgCGCc -3'
miRNA:   3'- aCUaCGGG-CUGG----------UGUGCCGGuaGCGc -5'
12796 5' -58.6 NC_003387.1 + 49295 0.69 0.377577
Target:  5'- aGGUGCUCG-CCgagcacgccgaggGCACGGCCccgagcaugAUCGCGc -3'
miRNA:   3'- aCUACGGGCuGG-------------UGUGCCGG---------UAGCGC- -5'
12796 5' -58.6 NC_003387.1 + 41587 0.75 0.156744
Target:  5'- aGGUGCCCGGCCACAacuucaUGGCgAaCGUGa -3'
miRNA:   3'- aCUACGGGCUGGUGU------GCCGgUaGCGC- -5'
12796 5' -58.6 NC_003387.1 + 18317 0.73 0.199039
Target:  5'- gUGgcGCCCGGCaacgGCGUGGCCGUCGUGc -3'
miRNA:   3'- -ACuaCGGGCUGg---UGUGCCGGUAGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.