miRNA display CGI


Results 1 - 20 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12796 5' -58.6 NC_003387.1 + 41123 1.09 0.000471
Target:  5'- gUGAUGCCCGACCACACGGCCAUCGCGa -3'
miRNA:   3'- -ACUACGGGCUGGUGUGCCGGUAGCGC- -5'
12796 5' -58.6 NC_003387.1 + 14894 0.81 0.051421
Target:  5'- gGGUGCCCGACCucGCuCGGCCcgAUCGCGc -3'
miRNA:   3'- aCUACGGGCUGG--UGuGCCGG--UAGCGC- -5'
12796 5' -58.6 NC_003387.1 + 12215 0.8 0.062756
Target:  5'- cGGUGCCgGGCCAC-CGGCgGUCGCc -3'
miRNA:   3'- aCUACGGgCUGGUGuGCCGgUAGCGc -5'
12796 5' -58.6 NC_003387.1 + 32243 0.77 0.109945
Target:  5'- cGAgcUGgCCGACCGCcUGGCCGUCGCc -3'
miRNA:   3'- aCU--ACgGGCUGGUGuGCCGGUAGCGc -5'
12796 5' -58.6 NC_003387.1 + 186 0.76 0.1293
Target:  5'- gUGAcGCCCGGCCGCcagcucgGCGGCUugucgcucuuGUCGCGg -3'
miRNA:   3'- -ACUaCGGGCUGGUG-------UGCCGG----------UAGCGC- -5'
12796 5' -58.6 NC_003387.1 + 42475 0.75 0.144557
Target:  5'- uUGA-GCCCGcGCUcgGCGCGGCuCAUCGCGu -3'
miRNA:   3'- -ACUaCGGGC-UGG--UGUGCCG-GUAGCGC- -5'
12796 5' -58.6 NC_003387.1 + 44776 0.75 0.14852
Target:  5'- aGcgGCCCGACCucgACAagcUGGCCcgCGCGa -3'
miRNA:   3'- aCuaCGGGCUGG---UGU---GCCGGuaGCGC- -5'
12796 5' -58.6 NC_003387.1 + 32320 0.75 0.152582
Target:  5'- cGAUGCCCGAcauggaCCGCuGCGGCUgAUCGCc -3'
miRNA:   3'- aCUACGGGCU------GGUG-UGCCGG-UAGCGc -5'
12796 5' -58.6 NC_003387.1 + 41587 0.75 0.156744
Target:  5'- aGGUGCCCGGCCACAacuucaUGGCgAaCGUGa -3'
miRNA:   3'- aCUACGGGCUGGUGU------GCCGgUaGCGC- -5'
12796 5' -58.6 NC_003387.1 + 40432 0.74 0.165379
Target:  5'- cGGUGCCCGGcCCGCugaucCGGCCgccgGUCGCc -3'
miRNA:   3'- aCUACGGGCU-GGUGu----GCCGG----UAGCGc -5'
12796 5' -58.6 NC_003387.1 + 45198 0.74 0.165379
Target:  5'- gUGuUGCCCGGCCcguucgaccCGCGGCCgAUCGUGg -3'
miRNA:   3'- -ACuACGGGCUGGu--------GUGCCGG-UAGCGC- -5'
12796 5' -58.6 NC_003387.1 + 7184 0.74 0.173974
Target:  5'- gGAUcGCCUuGCCGCACGGCCAgcacaccgucagcUCGCu -3'
miRNA:   3'- aCUA-CGGGcUGGUGUGCCGGU-------------AGCGc -5'
12796 5' -58.6 NC_003387.1 + 50770 0.74 0.174437
Target:  5'- cGcUGCCCGGCCAgaccCGCGGCCGgaucaugCGCu -3'
miRNA:   3'- aCuACGGGCUGGU----GUGCCGGUa------GCGc -5'
12796 5' -58.6 NC_003387.1 + 5802 0.74 0.183936
Target:  5'- cGGUGCCCGGCUcaaGCguGCGGCCGU-GCa -3'
miRNA:   3'- aCUACGGGCUGG---UG--UGCCGGUAgCGc -5'
12796 5' -58.6 NC_003387.1 + 18317 0.73 0.199039
Target:  5'- gUGgcGCCCGGCaacgGCGUGGCCGUCGUGc -3'
miRNA:   3'- -ACuaCGGGCUGg---UGUGCCGGUAGCGC- -5'
12796 5' -58.6 NC_003387.1 + 45395 0.73 0.204309
Target:  5'- ---cGCCCGGCCGCcCGaGCCgAUCGUGa -3'
miRNA:   3'- acuaCGGGCUGGUGuGC-CGG-UAGCGC- -5'
12796 5' -58.6 NC_003387.1 + 39565 0.72 0.220847
Target:  5'- cGA-GCCUGACCuCgACGGCCuguUCGCGc -3'
miRNA:   3'- aCUaCGGGCUGGuG-UGCCGGu--AGCGC- -5'
12796 5' -58.6 NC_003387.1 + 15700 0.72 0.24466
Target:  5'- -cGUGCCCGGCCAUAU--CCAUUGCGu -3'
miRNA:   3'- acUACGGGCUGGUGUGccGGUAGCGC- -5'
12796 5' -58.6 NC_003387.1 + 51866 0.72 0.24466
Target:  5'- cGGUgGCCCcgguGAUCGCgaaGGCCGUCGCGa -3'
miRNA:   3'- aCUA-CGGG----CUGGUGug-CCGGUAGCGC- -5'
12796 5' -58.6 NC_003387.1 + 43945 0.71 0.257346
Target:  5'- aGGUcGCCCGccGCCGCACGGCgaaggcccgCAUgGCGa -3'
miRNA:   3'- aCUA-CGGGC--UGGUGUGCCG---------GUAgCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.