miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12798 3' -55 NC_003387.1 + 240 0.65 0.741739
Target:  5'- cGGugAGCcGCCCcaauguuGUCGAGGgugUCAGUGCc -3'
miRNA:   3'- -CUugUCGcUGGG-------CAGCUCC---GGUUACG- -5'
12798 3' -55 NC_003387.1 + 366 0.68 0.622931
Target:  5'- uGACAGUcuGGCUCGUCGcGGCgAAUGa -3'
miRNA:   3'- cUUGUCG--CUGGGCAGCuCCGgUUACg -5'
12798 3' -55 NC_003387.1 + 470 0.67 0.667141
Target:  5'- cGACGGCGACCgGcgCGAGcuGCUcgucgcGAUGCg -3'
miRNA:   3'- cUUGUCGCUGGgCa-GCUC--CGG------UUACG- -5'
12798 3' -55 NC_003387.1 + 1652 0.69 0.535465
Target:  5'- cGACGGCcGCCaCGUCGAGGa-GGUGUg -3'
miRNA:   3'- cUUGUCGcUGG-GCAGCUCCggUUACG- -5'
12798 3' -55 NC_003387.1 + 2152 0.65 0.741739
Target:  5'- -cACcGCGGCCUGUUGAGGUgucaacaCAAaGCg -3'
miRNA:   3'- cuUGuCGCUGGGCAGCUCCG-------GUUaCG- -5'
12798 3' -55 NC_003387.1 + 2508 0.71 0.413979
Target:  5'- uGACGGUGACgCCGacugaugaGGGGCCGGUGUu -3'
miRNA:   3'- cUUGUCGCUG-GGCag------CUCCGGUUACG- -5'
12798 3' -55 NC_003387.1 + 3072 0.71 0.442821
Target:  5'- cGACGuCGACCCacUCGGGGCCAA-GCu -3'
miRNA:   3'- cUUGUcGCUGGGc-AGCUCCGGUUaCG- -5'
12798 3' -55 NC_003387.1 + 3443 0.67 0.64506
Target:  5'- cGAGCaccugGGCGACCUucaCGcGGUCGAUGCg -3'
miRNA:   3'- -CUUG-----UCGCUGGGca-GCuCCGGUUACG- -5'
12798 3' -55 NC_003387.1 + 3673 0.74 0.274186
Target:  5'- ---gAGCGGCCUGacCGAGGCCGAgggGCu -3'
miRNA:   3'- cuugUCGCUGGGCa-GCUCCGGUUa--CG- -5'
12798 3' -55 NC_003387.1 + 3681 0.71 0.423465
Target:  5'- cAGCAGCGcaaCCGUCGAG-CCGGUGa -3'
miRNA:   3'- cUUGUCGCug-GGCAGCUCcGGUUACg -5'
12798 3' -55 NC_003387.1 + 4572 0.66 0.699986
Target:  5'- cGACaAGCuGCUCGcCGAGGCCGAcaaGCu -3'
miRNA:   3'- cUUG-UCGcUGGGCaGCUCCGGUUa--CG- -5'
12798 3' -55 NC_003387.1 + 4641 0.78 0.148227
Target:  5'- cGGCAGCGccACCCGUCGAGGCgcuuCGggGCg -3'
miRNA:   3'- cUUGUCGC--UGGGCAGCUCCG----GUuaCG- -5'
12798 3' -55 NC_003387.1 + 5135 0.66 0.732229
Target:  5'- cAGCGuGCGACCCGaucggUCGAGcuucaccgacacGCgAGUGCg -3'
miRNA:   3'- cUUGU-CGCUGGGC-----AGCUC------------CGgUUACG- -5'
12798 3' -55 NC_003387.1 + 5238 0.7 0.462667
Target:  5'- uGAACcGCGACCCGcu--GGCCGAcgGCg -3'
miRNA:   3'- -CUUGuCGCUGGGCagcuCCGGUUa-CG- -5'
12798 3' -55 NC_003387.1 + 5516 0.68 0.578845
Target:  5'- cGAGCAGCGGCUCGcccgCGAgcgGGCgAAguucgGCg -3'
miRNA:   3'- -CUUGUCGCUGGGCa---GCU---CCGgUUa----CG- -5'
12798 3' -55 NC_003387.1 + 6141 0.7 0.466692
Target:  5'- ---uGGCGACCCugccCGAGGCCGAuugggucggugagucUGCg -3'
miRNA:   3'- cuugUCGCUGGGca--GCUCCGGUU---------------ACG- -5'
12798 3' -55 NC_003387.1 + 6421 0.72 0.368574
Target:  5'- -cGCGGUGACugcgggccaggCCGUCGAGGUCGuggGCg -3'
miRNA:   3'- cuUGUCGCUG-----------GGCAGCUCCGGUua-CG- -5'
12798 3' -55 NC_003387.1 + 8065 0.67 0.678137
Target:  5'- cGGCAGCcccucGGCCaggauCGcCGAGGCCGcgGCc -3'
miRNA:   3'- cUUGUCG-----CUGG-----GCaGCUCCGGUuaCG- -5'
12798 3' -55 NC_003387.1 + 8148 0.69 0.523727
Target:  5'- cGGGCAGCGACCgCGaCGuguuucucGGCCAcuuccugauccgcGUGCg -3'
miRNA:   3'- -CUUGUCGCUGG-GCaGCu-------CCGGU-------------UACG- -5'
12798 3' -55 NC_003387.1 + 11275 0.66 0.689089
Target:  5'- --uCGGCGACUCGaUCaAGGCUcuUGCg -3'
miRNA:   3'- cuuGUCGCUGGGC-AGcUCCGGuuACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.