miRNA display CGI


Results 1 - 20 of 124 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12798 3' -55 NC_003387.1 + 49738 0.83 0.072841
Target:  5'- cGAGCAGCGcCUCGUCGAGGCCccgaGCg -3'
miRNA:   3'- -CUUGUCGCuGGGCAGCUCCGGuua-CG- -5'
12798 3' -55 NC_003387.1 + 43893 0.71 0.423465
Target:  5'- cGGugAGCcGCUCGUCGAuaGGCCAAguucggGCg -3'
miRNA:   3'- -CUugUCGcUGGGCAGCU--CCGGUUa-----CG- -5'
12798 3' -55 NC_003387.1 + 40961 0.7 0.452685
Target:  5'- ----cGCGACgCGaUCGAGGCCGA-GCu -3'
miRNA:   3'- cuuguCGCUGgGC-AGCUCCGGUUaCG- -5'
12798 3' -55 NC_003387.1 + 26690 0.65 0.74279
Target:  5'- -uGCAGCucgcgcuGCUCGUCGAcGCCGucGUGCg -3'
miRNA:   3'- cuUGUCGc------UGGGCAGCUcCGGU--UACG- -5'
12798 3' -55 NC_003387.1 + 3673 0.74 0.274186
Target:  5'- ---gAGCGGCCUGacCGAGGCCGAgggGCu -3'
miRNA:   3'- cuugUCGCUGGGCa-GCUCCGGUUa--CG- -5'
12798 3' -55 NC_003387.1 + 40530 0.74 0.288466
Target:  5'- cGAGCAGCGACCUGccCGAGGgcgugacccCCGAgGCg -3'
miRNA:   3'- -CUUGUCGCUGGGCa-GCUCC---------GGUUaCG- -5'
12798 3' -55 NC_003387.1 + 21311 0.73 0.343019
Target:  5'- cGAGCAGUGGCgCGUgagCGGGGCUGAcgGCg -3'
miRNA:   3'- -CUUGUCGCUGgGCA---GCUCCGGUUa-CG- -5'
12798 3' -55 NC_003387.1 + 23871 0.73 0.343019
Target:  5'- gGAcCGGCGACCCGgugUGGcuGGCCGacGUGCu -3'
miRNA:   3'- -CUuGUCGCUGGGCa--GCU--CCGGU--UACG- -5'
12798 3' -55 NC_003387.1 + 44606 0.72 0.377378
Target:  5'- ---gAGCGACgCCGUCG-GGCCGugGCg -3'
miRNA:   3'- cuugUCGCUG-GGCAGCuCCGGUuaCG- -5'
12798 3' -55 NC_003387.1 + 40148 0.71 0.413979
Target:  5'- -cACGGCGACaCCGUCGGcGGCCcGAUcGUc -3'
miRNA:   3'- cuUGUCGCUG-GGCAGCU-CCGG-UUA-CG- -5'
12798 3' -55 NC_003387.1 + 51503 0.72 0.386322
Target:  5'- gGAGCAGCucgacgagccauGcCCCGUCGAcGGCCAcccuUGCc -3'
miRNA:   3'- -CUUGUCG------------CuGGGCAGCU-CCGGUu---ACG- -5'
12798 3' -55 NC_003387.1 + 6421 0.72 0.368574
Target:  5'- -cGCGGUGACugcgggccaggCCGUCGAGGUCGuggGCg -3'
miRNA:   3'- cuUGUCGCUG-----------GGCAGCUCCGGUua-CG- -5'
12798 3' -55 NC_003387.1 + 43467 0.76 0.211175
Target:  5'- cGGCGGCGAcguCCUGUCGGGGCgGuucAUGCg -3'
miRNA:   3'- cUUGUCGCU---GGGCAGCUCCGgU---UACG- -5'
12798 3' -55 NC_003387.1 + 12460 0.72 0.395405
Target:  5'- uGGCGGCGGCCUGgccgCG-GGCCug-GCg -3'
miRNA:   3'- cUUGUCGCUGGGCa---GCuCCGGuuaCG- -5'
12798 3' -55 NC_003387.1 + 33897 0.75 0.260477
Target:  5'- uGGGCGGCGACCCGUC--GGCgAucUGCg -3'
miRNA:   3'- -CUUGUCGCUGGGCAGcuCCGgUu-ACG- -5'
12798 3' -55 NC_003387.1 + 43164 0.72 0.368574
Target:  5'- cGGCGGCGACaaGUCGAuGGUCGaguacGUGCa -3'
miRNA:   3'- cUUGUCGCUGggCAGCU-CCGGU-----UACG- -5'
12798 3' -55 NC_003387.1 + 2508 0.71 0.413979
Target:  5'- uGACGGUGACgCCGacugaugaGGGGCCGGUGUu -3'
miRNA:   3'- cUUGUCGCUG-GGCag------CUCCGGUUACG- -5'
12798 3' -55 NC_003387.1 + 19145 0.71 0.446752
Target:  5'- cGGGCGGUGGCUCGUCGAcgcugucgagggcgcGGCCc--GCa -3'
miRNA:   3'- -CUUGUCGCUGGGCAGCU---------------CCGGuuaCG- -5'
12798 3' -55 NC_003387.1 + 28465 0.74 0.274186
Target:  5'- uGGCGGCGGCCCc-CGAGGUCAA-GCu -3'
miRNA:   3'- cUUGUCGCUGGGcaGCUCCGGUUaCG- -5'
12798 3' -55 NC_003387.1 + 13897 0.73 0.326704
Target:  5'- -uGCGGCGGCUCGUCGAG-CCA--GCu -3'
miRNA:   3'- cuUGUCGCUGGGCAGCUCcGGUuaCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.