miRNA display CGI


Results 1 - 20 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12799 3' -57.7 NC_003387.1 + 6201 0.66 0.606032
Target:  5'- aCGcCGCCGuUGguGCA----GUCGCCGa -3'
miRNA:   3'- -GCaGCGGC-GCguCGUguuaCAGCGGC- -5'
12799 3' -57.7 NC_003387.1 + 13133 0.66 0.606032
Target:  5'- --cCGCgGCGCAGCuuGAgGaCGCCGa -3'
miRNA:   3'- gcaGCGgCGCGUCGugUUaCaGCGGC- -5'
12799 3' -57.7 NC_003387.1 + 40342 0.66 0.606032
Target:  5'- gCGgaaaGCCGUGCAGCAgGccGUGaUCGCgGc -3'
miRNA:   3'- -GCag--CGGCGCGUCGUgU--UAC-AGCGgC- -5'
12799 3' -57.7 NC_003387.1 + 23974 0.66 0.606032
Target:  5'- aG-CGCCGgGCGGCugGuUGUgcacCGCCu -3'
miRNA:   3'- gCaGCGGCgCGUCGugUuACA----GCGGc -5'
12799 3' -57.7 NC_003387.1 + 31817 0.66 0.606032
Target:  5'- gGUCGCCGC-CGaucGCAuccucCAAUGaCGCCGc -3'
miRNA:   3'- gCAGCGGCGcGU---CGU-----GUUACaGCGGC- -5'
12799 3' -57.7 NC_003387.1 + 16707 0.66 0.606032
Target:  5'- cCGcUUGCgGCGCAcCACGAccUCGCCGu -3'
miRNA:   3'- -GC-AGCGgCGCGUcGUGUUacAGCGGC- -5'
12799 3' -57.7 NC_003387.1 + 33397 0.66 0.606032
Target:  5'- -cUCGCCGCGCucgucgcuGUACucgGUcaCGCCGa -3'
miRNA:   3'- gcAGCGGCGCGu-------CGUGuuaCA--GCGGC- -5'
12799 3' -57.7 NC_003387.1 + 30799 0.66 0.606032
Target:  5'- cCGcCGCCGaGCAcCACAAUGUCGauGa -3'
miRNA:   3'- -GCaGCGGCgCGUcGUGUUACAGCggC- -5'
12799 3' -57.7 NC_003387.1 + 52225 0.66 0.601714
Target:  5'- gGUCGCCacgcgggcGCGCAucGCgACGAgcagcucgcgccgGUCGCCGu -3'
miRNA:   3'- gCAGCGG--------CGCGU--CG-UGUUa------------CAGCGGC- -5'
12799 3' -57.7 NC_003387.1 + 30863 0.66 0.595244
Target:  5'- -cUCGUgCGCGuCGGCACcuGGUG-CGCCGg -3'
miRNA:   3'- gcAGCG-GCGC-GUCGUG--UUACaGCGGC- -5'
12799 3' -57.7 NC_003387.1 + 13445 0.66 0.595244
Target:  5'- cCGUCGUCGaGCAGCuugccCAGc-UCGCCGa -3'
miRNA:   3'- -GCAGCGGCgCGUCGu----GUUacAGCGGC- -5'
12799 3' -57.7 NC_003387.1 + 11679 0.66 0.595244
Target:  5'- uCGgCGaUCGCGUGGguguCAAUGUCGCCGu -3'
miRNA:   3'- -GCaGC-GGCGCGUCgu--GUUACAGCGGC- -5'
12799 3' -57.7 NC_003387.1 + 22991 0.66 0.595244
Target:  5'- -cUCGcCCGCGUAGCugcc-GUCGUCGg -3'
miRNA:   3'- gcAGC-GGCGCGUCGuguuaCAGCGGC- -5'
12799 3' -57.7 NC_003387.1 + 39782 0.66 0.595244
Target:  5'- --aCGCCGaCGUGGCACugccgagCGCCGa -3'
miRNA:   3'- gcaGCGGC-GCGUCGUGuuaca--GCGGC- -5'
12799 3' -57.7 NC_003387.1 + 8537 0.66 0.595244
Target:  5'- --cUGCCGCGCAGCAUuuccgcagGUCaCCa -3'
miRNA:   3'- gcaGCGGCGCGUCGUGuua-----CAGcGGc -5'
12799 3' -57.7 NC_003387.1 + 29077 0.66 0.584486
Target:  5'- gCGUCGCgGCGCuGUGCAG-GUucaucucggaUGCCGu -3'
miRNA:   3'- -GCAGCGgCGCGuCGUGUUaCA----------GCGGC- -5'
12799 3' -57.7 NC_003387.1 + 3465 0.66 0.584486
Target:  5'- -cUCGCUGCGCGGCGgcgaGGUGaaaUCGCUu -3'
miRNA:   3'- gcAGCGGCGCGUCGUg---UUAC---AGCGGc -5'
12799 3' -57.7 NC_003387.1 + 21573 0.66 0.584486
Target:  5'- cCGUgGCCcaggcGCGCGGCAuCAGcGagGCCGa -3'
miRNA:   3'- -GCAgCGG-----CGCGUCGU-GUUaCagCGGC- -5'
12799 3' -57.7 NC_003387.1 + 38326 0.66 0.584486
Target:  5'- gGUCugaGCCGUaCAGCgACAagGUCGUCGa -3'
miRNA:   3'- gCAG---CGGCGcGUCG-UGUuaCAGCGGC- -5'
12799 3' -57.7 NC_003387.1 + 30220 0.66 0.584486
Target:  5'- aCGUCGagCGCGCcGC-CGAggccGUCGCCc -3'
miRNA:   3'- -GCAGCg-GCGCGuCGuGUUa---CAGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.