miRNA display CGI


Results 21 - 40 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12799 3' -57.7 NC_003387.1 + 50068 0.72 0.282888
Target:  5'- uGUCGUCGUaCAGCACGccG-CGCCGg -3'
miRNA:   3'- gCAGCGGCGcGUCGUGUuaCaGCGGC- -5'
12799 3' -57.7 NC_003387.1 + 30661 0.72 0.282888
Target:  5'- cCGUCGCCaaCGguGC-CGGUGaUCGCCGc -3'
miRNA:   3'- -GCAGCGGc-GCguCGuGUUAC-AGCGGC- -5'
12799 3' -57.7 NC_003387.1 + 43567 0.71 0.289975
Target:  5'- cCGUCGUCGCuGUAcuGCACGAcgugGUUGCCGu -3'
miRNA:   3'- -GCAGCGGCG-CGU--CGUGUUa---CAGCGGC- -5'
12799 3' -57.7 NC_003387.1 + 48728 0.71 0.289975
Target:  5'- cCGUgCGCCGCGaCGaguccaugaccGCGCGG-GUCGCCGa -3'
miRNA:   3'- -GCA-GCGGCGC-GU-----------CGUGUUaCAGCGGC- -5'
12799 3' -57.7 NC_003387.1 + 2539 0.71 0.292848
Target:  5'- cCGUCccgGUCGCGCAGgAUGAacucgccgguggcguUGUCGCCGg -3'
miRNA:   3'- -GCAG---CGGCGCGUCgUGUU---------------ACAGCGGC- -5'
12799 3' -57.7 NC_003387.1 + 10499 0.71 0.2972
Target:  5'- -cUCGCCcaucGCGguGCGCcg-GUCGCCGu -3'
miRNA:   3'- gcAGCGG----CGCguCGUGuuaCAGCGGC- -5'
12799 3' -57.7 NC_003387.1 + 8454 0.71 0.2972
Target:  5'- aGcCaCCGCGCGGCGCGGUGUuUGCUGc -3'
miRNA:   3'- gCaGcGGCGCGUCGUGUUACA-GCGGC- -5'
12799 3' -57.7 NC_003387.1 + 29441 0.71 0.312068
Target:  5'- uCGUCGuuGuCGUAGCGcCGGUG-CGCCa -3'
miRNA:   3'- -GCAGCggC-GCGUCGU-GUUACaGCGGc -5'
12799 3' -57.7 NC_003387.1 + 637 0.71 0.312068
Target:  5'- gCGUCGCCGcCGCGGCAgCGA---CGCCc -3'
miRNA:   3'- -GCAGCGGC-GCGUCGU-GUUacaGCGGc -5'
12799 3' -57.7 NC_003387.1 + 24042 0.71 0.319712
Target:  5'- gGUgGCCGUGaaucaCGGUcacgACGGUGUCGCCGa -3'
miRNA:   3'- gCAgCGGCGC-----GUCG----UGUUACAGCGGC- -5'
12799 3' -57.7 NC_003387.1 + 14984 0.71 0.32671
Target:  5'- --cCGCCGCGCAcgguggcGCACAucaagGUGUCGCa- -3'
miRNA:   3'- gcaGCGGCGCGU-------CGUGU-----UACAGCGgc -5'
12799 3' -57.7 NC_003387.1 + 13786 0.71 0.327494
Target:  5'- gCGUCGCCGCagaucaGCGGcCACGuUG-CGCCa -3'
miRNA:   3'- -GCAGCGGCG------CGUC-GUGUuACaGCGGc -5'
12799 3' -57.7 NC_003387.1 + 22116 0.71 0.327494
Target:  5'- gGUUGCCGUGCGuCGUGAUGUgGCCGa -3'
miRNA:   3'- gCAGCGGCGCGUcGUGUUACAgCGGC- -5'
12799 3' -57.7 NC_003387.1 + 21653 0.71 0.327494
Target:  5'- uCGUCGaCCGCgGCGGCggccgaGCAcGUGuUCGCCGa -3'
miRNA:   3'- -GCAGC-GGCG-CGUCG------UGU-UAC-AGCGGC- -5'
12799 3' -57.7 NC_003387.1 + 2044 0.71 0.327494
Target:  5'- cCGUCGCCGaGCuGGcCGCGGUGgcggCGCCa -3'
miRNA:   3'- -GCAGCGGCgCG-UC-GUGUUACa---GCGGc -5'
12799 3' -57.7 NC_003387.1 + 10249 0.7 0.335417
Target:  5'- ---aGCCGCGCcgAGCGCGGgcucaagGUCGCCc -3'
miRNA:   3'- gcagCGGCGCG--UCGUGUUa------CAGCGGc -5'
12799 3' -57.7 NC_003387.1 + 41989 0.7 0.335417
Target:  5'- gGcCGCCGCGguGCucaaGCGGUGggGCCGc -3'
miRNA:   3'- gCaGCGGCGCguCG----UGUUACagCGGC- -5'
12799 3' -57.7 NC_003387.1 + 14699 0.7 0.335417
Target:  5'- cCGUCGCCGCgauccguuGCGGUGCAcgGcUUGCUGc -3'
miRNA:   3'- -GCAGCGGCG--------CGUCGUGUuaC-AGCGGC- -5'
12799 3' -57.7 NC_003387.1 + 45123 0.7 0.335417
Target:  5'- gGUCGCCGUGCguccAGuCACucucggggGUCGCCa -3'
miRNA:   3'- gCAGCGGCGCG----UC-GUGuua-----CAGCGGc -5'
12799 3' -57.7 NC_003387.1 + 50022 0.7 0.343478
Target:  5'- gCGUCGCCG---AGCACAAccUCGCCGa -3'
miRNA:   3'- -GCAGCGGCgcgUCGUGUUacAGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.