miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12799 5' -54.4 NC_003387.1 + 37445 1.08 0.001356
Target:  5'- uGUCGUGCAACAUCUCCUCGGCGUCGAc -3'
miRNA:   3'- -CAGCACGUUGUAGAGGAGCCGCAGCU- -5'
12799 5' -54.4 NC_003387.1 + 6880 0.76 0.23839
Target:  5'- cUCGcGCAGgAUCUCCgCGGCGUCGu -3'
miRNA:   3'- cAGCaCGUUgUAGAGGaGCCGCAGCu -5'
12799 5' -54.4 NC_003387.1 + 46469 0.74 0.305623
Target:  5'- cUCGUGCAccgggaugaugacgGCgAUUUCCUCGGCGaCGAg -3'
miRNA:   3'- cAGCACGU--------------UG-UAGAGGAGCCGCaGCU- -5'
12799 5' -54.4 NC_003387.1 + 51417 0.74 0.315665
Target:  5'- cGUCGU-CGACGUCgcccgCCagGGCGUCGAg -3'
miRNA:   3'- -CAGCAcGUUGUAGa----GGagCCGCAGCU- -5'
12799 5' -54.4 NC_003387.1 + 35866 0.73 0.339781
Target:  5'- -gCGUGCGGCGccaUCUCCUCGcGCGgcgUGAg -3'
miRNA:   3'- caGCACGUUGU---AGAGGAGC-CGCa--GCU- -5'
12799 5' -54.4 NC_003387.1 + 31153 0.73 0.373967
Target:  5'- aGUCGUGCAGgAUCagcucgguugCCUCGGUGcCGGg -3'
miRNA:   3'- -CAGCACGUUgUAGa---------GGAGCCGCaGCU- -5'
12799 5' -54.4 NC_003387.1 + 3467 0.72 0.38287
Target:  5'- gGUCGaUGC-GCGUCaCCcCGGCGUCGAg -3'
miRNA:   3'- -CAGC-ACGuUGUAGaGGaGCCGCAGCU- -5'
12799 5' -54.4 NC_003387.1 + 26598 0.72 0.41986
Target:  5'- cUCGUGCuGACAaCgCCUCGGCGgCGAa -3'
miRNA:   3'- cAGCACG-UUGUaGaGGAGCCGCaGCU- -5'
12799 5' -54.4 NC_003387.1 + 19572 0.71 0.44898
Target:  5'- aGUCGgcugGCGAgc-CUgCUCGGCGUCGAc -3'
miRNA:   3'- -CAGCa---CGUUguaGAgGAGCCGCAGCU- -5'
12799 5' -54.4 NC_003387.1 + 50415 0.71 0.458933
Target:  5'- cGUCGgGCGGCAgaUCgucgCCUCGGCGUaCGc -3'
miRNA:   3'- -CAGCaCGUUGU--AGa---GGAGCCGCA-GCu -5'
12799 5' -54.4 NC_003387.1 + 48393 0.7 0.542323
Target:  5'- -gCGcUGguGCGcCUUCUCGGCGUUGAg -3'
miRNA:   3'- caGC-ACguUGUaGAGGAGCCGCAGCU- -5'
12799 5' -54.4 NC_003387.1 + 5296 0.69 0.59693
Target:  5'- uGUUGUGCAugAggccCUCCUCGGgcUCGGg -3'
miRNA:   3'- -CAGCACGUugUa---GAGGAGCCgcAGCU- -5'
12799 5' -54.4 NC_003387.1 + 2337 0.69 0.59693
Target:  5'- cUCG-GCggUGUCgaggccgCCgUCGGCGUCGAg -3'
miRNA:   3'- cAGCaCGuuGUAGa------GG-AGCCGCAGCU- -5'
12799 5' -54.4 NC_003387.1 + 8267 0.68 0.652278
Target:  5'- -gCGUGCAGCGccUCgcgcagcgCCUCGugcGCGUCGGc -3'
miRNA:   3'- caGCACGUUGU--AGa-------GGAGC---CGCAGCU- -5'
12799 5' -54.4 NC_003387.1 + 4163 0.68 0.663332
Target:  5'- cGUCGaUGCAcgccuggcACGUgaCCUCGGCG-CGGu -3'
miRNA:   3'- -CAGC-ACGU--------UGUAgaGGAGCCGCaGCU- -5'
12799 5' -54.4 NC_003387.1 + 22488 0.68 0.663332
Target:  5'- cGUCGUaccggGCGACGg--CCUCGGCGgcgcgcUCGAc -3'
miRNA:   3'- -CAGCA-----CGUUGUagaGGAGCCGC------AGCU- -5'
12799 5' -54.4 NC_003387.1 + 25447 0.68 0.663332
Target:  5'- --aGUGCGGCGuUCUCCUC-GCG-CGAc -3'
miRNA:   3'- cagCACGUUGU-AGAGGAGcCGCaGCU- -5'
12799 5' -54.4 NC_003387.1 + 35507 0.67 0.685341
Target:  5'- cGUCGaGCGGugUAUCUgCCUCGGCcUCGGc -3'
miRNA:   3'- -CAGCaCGUU--GUAGA-GGAGCCGcAGCU- -5'
12799 5' -54.4 NC_003387.1 + 34106 0.67 0.707143
Target:  5'- uUCG-GCGGCAgaUCggCGGCGUCGAc -3'
miRNA:   3'- cAGCaCGUUGUagAGgaGCCGCAGCU- -5'
12799 5' -54.4 NC_003387.1 + 47551 0.67 0.707143
Target:  5'- gGUCGUGCu-CGUCggccgCaCUCGcGUGUCGGu -3'
miRNA:   3'- -CAGCACGuuGUAGa----G-GAGC-CGCAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.