Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12799 | 5' | -54.4 | NC_003387.1 | + | 31153 | 0.73 | 0.373967 |
Target: 5'- aGUCGUGCAGgAUCagcucgguugCCUCGGUGcCGGg -3' miRNA: 3'- -CAGCACGUUgUAGa---------GGAGCCGCaGCU- -5' |
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12799 | 5' | -54.4 | NC_003387.1 | + | 47551 | 0.67 | 0.707143 |
Target: 5'- gGUCGUGCu-CGUCggccgCaCUCGcGUGUCGGu -3' miRNA: 3'- -CAGCACGuuGUAGa----G-GAGC-CGCAGCU- -5' |
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12799 | 5' | -54.4 | NC_003387.1 | + | 50415 | 0.71 | 0.458933 |
Target: 5'- cGUCGgGCGGCAgaUCgucgCCUCGGCGUaCGc -3' miRNA: 3'- -CAGCaCGUUGU--AGa---GGAGCCGCA-GCu -5' |
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12799 | 5' | -54.4 | NC_003387.1 | + | 40109 | 0.66 | 0.74976 |
Target: 5'- cUCGcagGCGGCGg--CC-CGGCGUCGGg -3' miRNA: 3'- cAGCa--CGUUGUagaGGaGCCGCAGCU- -5' |
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12799 | 5' | -54.4 | NC_003387.1 | + | 19572 | 0.71 | 0.44898 |
Target: 5'- aGUCGgcugGCGAgc-CUgCUCGGCGUCGAc -3' miRNA: 3'- -CAGCa---CGUUguaGAgGAGCCGCAGCU- -5' |
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12799 | 5' | -54.4 | NC_003387.1 | + | 26598 | 0.72 | 0.41986 |
Target: 5'- cUCGUGCuGACAaCgCCUCGGCGgCGAa -3' miRNA: 3'- cAGCACG-UUGUaGaGGAGCCGCaGCU- -5' |
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12799 | 5' | -54.4 | NC_003387.1 | + | 51417 | 0.74 | 0.315665 |
Target: 5'- cGUCGU-CGACGUCgcccgCCagGGCGUCGAg -3' miRNA: 3'- -CAGCAcGUUGUAGa----GGagCCGCAGCU- -5' |
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12799 | 5' | -54.4 | NC_003387.1 | + | 35866 | 0.73 | 0.339781 |
Target: 5'- -gCGUGCGGCGccaUCUCCUCGcGCGgcgUGAg -3' miRNA: 3'- caGCACGUUGU---AGAGGAGC-CGCa--GCU- -5' |
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12799 | 5' | -54.4 | NC_003387.1 | + | 46469 | 0.74 | 0.305623 |
Target: 5'- cUCGUGCAccgggaugaugacgGCgAUUUCCUCGGCGaCGAg -3' miRNA: 3'- cAGCACGU--------------UG-UAGAGGAGCCGCaGCU- -5' |
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12799 | 5' | -54.4 | NC_003387.1 | + | 5296 | 0.69 | 0.59693 |
Target: 5'- uGUUGUGCAugAggccCUCCUCGGgcUCGGg -3' miRNA: 3'- -CAGCACGUugUa---GAGGAGCCgcAGCU- -5' |
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12799 | 5' | -54.4 | NC_003387.1 | + | 2337 | 0.69 | 0.59693 |
Target: 5'- cUCG-GCggUGUCgaggccgCCgUCGGCGUCGAg -3' miRNA: 3'- cAGCaCGuuGUAGa------GG-AGCCGCAGCU- -5' |
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12799 | 5' | -54.4 | NC_003387.1 | + | 8267 | 0.68 | 0.652278 |
Target: 5'- -gCGUGCAGCGccUCgcgcagcgCCUCGugcGCGUCGGc -3' miRNA: 3'- caGCACGUUGU--AGa-------GGAGC---CGCAGCU- -5' |
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12799 | 5' | -54.4 | NC_003387.1 | + | 4163 | 0.68 | 0.663332 |
Target: 5'- cGUCGaUGCAcgccuggcACGUgaCCUCGGCG-CGGu -3' miRNA: 3'- -CAGC-ACGU--------UGUAgaGGAGCCGCaGCU- -5' |
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12799 | 5' | -54.4 | NC_003387.1 | + | 25447 | 0.68 | 0.663332 |
Target: 5'- --aGUGCGGCGuUCUCCUC-GCG-CGAc -3' miRNA: 3'- cagCACGUUGU-AGAGGAGcCGCaGCU- -5' |
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12799 | 5' | -54.4 | NC_003387.1 | + | 22488 | 0.68 | 0.663332 |
Target: 5'- cGUCGUaccggGCGACGg--CCUCGGCGgcgcgcUCGAc -3' miRNA: 3'- -CAGCA-----CGUUGUagaGGAGCCGC------AGCU- -5' |
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12799 | 5' | -54.4 | NC_003387.1 | + | 35507 | 0.67 | 0.685341 |
Target: 5'- cGUCGaGCGGugUAUCUgCCUCGGCcUCGGc -3' miRNA: 3'- -CAGCaCGUU--GUAGA-GGAGCCGcAGCU- -5' |
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12799 | 5' | -54.4 | NC_003387.1 | + | 19119 | 0.66 | 0.74976 |
Target: 5'- gGUCGUGCcACA---CCUCGGCGg-GAu -3' miRNA: 3'- -CAGCACGuUGUagaGGAGCCGCagCU- -5' |
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12799 | 5' | -54.4 | NC_003387.1 | + | 20427 | 0.66 | 0.74976 |
Target: 5'- gGUUGUGCAGCcgccggugCUCCUCGcGCccccacgccuuGUCGGc -3' miRNA: 3'- -CAGCACGUUGua------GAGGAGC-CG-----------CAGCU- -5' |
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12799 | 5' | -54.4 | NC_003387.1 | + | 43315 | 0.66 | 0.74976 |
Target: 5'- cGUCG-GCc-CA-CUCCUCGGCGaUCGu -3' miRNA: 3'- -CAGCaCGuuGUaGAGGAGCCGC-AGCu -5' |
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12799 | 5' | -54.4 | NC_003387.1 | + | 11618 | 0.66 | 0.753927 |
Target: 5'- gGUCGUGCAGCGccagcagcucgcggcUCacgaucgccCCUCGaucGCGUCGAc -3' miRNA: 3'- -CAGCACGUUGU---------------AGa--------GGAGC---CGCAGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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