miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12800 3' -53.3 NC_003387.1 + 47907 0.66 0.836335
Target:  5'- aCGaGCUugcgCACGCGCugGUcGGcGGCa -3'
miRNA:   3'- gGCgCGAa---GUGCGCGugCAaUCaCUG- -5'
12800 3' -53.3 NC_003387.1 + 15856 0.66 0.827258
Target:  5'- gCGgGCUgCAacgUGCGCGCGUacauGUGGCu -3'
miRNA:   3'- gGCgCGAaGU---GCGCGUGCAau--CACUG- -5'
12800 3' -53.3 NC_003387.1 + 3572 0.66 0.825418
Target:  5'- gCGCGCUggugugcaccgaCACGUguacagGCGCGacgGGUGACa -3'
miRNA:   3'- gGCGCGAa-----------GUGCG------CGUGCaa-UCACUG- -5'
12800 3' -53.3 NC_003387.1 + 49955 0.66 0.8142
Target:  5'- gCCGUGCUcgaUCAcgucggugaccuCGCGCACGUUcaccggcugcugcGUGGCc -3'
miRNA:   3'- -GGCGCGA---AGU------------GCGCGUGCAAu------------CACUG- -5'
12800 3' -53.3 NC_003387.1 + 51524 0.66 0.812303
Target:  5'- gCCGCGUUcgUCGCGgGCaccaugucguccaucGCGUUcucGGUGAg -3'
miRNA:   3'- -GGCGCGA--AGUGCgCG---------------UGCAA---UCACUg -5'
12800 3' -53.3 NC_003387.1 + 41797 0.66 0.808485
Target:  5'- gCCGCGac-CugGCGCACGcc--UGGCa -3'
miRNA:   3'- -GGCGCgaaGugCGCGUGCaaucACUG- -5'
12800 3' -53.3 NC_003387.1 + 48830 0.66 0.808485
Target:  5'- gUCGUGCUgcucggCGCGaCGCACGgc-GUGcACg -3'
miRNA:   3'- -GGCGCGAa-----GUGC-GCGUGCaauCAC-UG- -5'
12800 3' -53.3 NC_003387.1 + 38077 0.66 0.798809
Target:  5'- gCCGCGU--CACuGUGCGCGgcGGccUGACg -3'
miRNA:   3'- -GGCGCGaaGUG-CGCGUGCaaUC--ACUG- -5'
12800 3' -53.3 NC_003387.1 + 4660 0.66 0.788954
Target:  5'- -gGCGCUUCGgG-GCGCGguagcgGGUGAa -3'
miRNA:   3'- ggCGCGAAGUgCgCGUGCaa----UCACUg -5'
12800 3' -53.3 NC_003387.1 + 15786 0.66 0.788954
Target:  5'- gUCGCGCUUUAgcgugaucauguCGCGCugGgc--UGACg -3'
miRNA:   3'- -GGCGCGAAGU------------GCGCGugCaaucACUG- -5'
12800 3' -53.3 NC_003387.1 + 42124 0.66 0.787959
Target:  5'- gCCgGUGCUcgUCACGUGUgaacgugGCGgcGGUGGCc -3'
miRNA:   3'- -GG-CGCGA--AGUGCGCG-------UGCaaUCACUG- -5'
12800 3' -53.3 NC_003387.1 + 3007 0.67 0.768755
Target:  5'- uCCGCGUUgCGCGUGUggACGUUugaagaucccgaGGUGAa -3'
miRNA:   3'- -GGCGCGAaGUGCGCG--UGCAA------------UCACUg -5'
12800 3' -53.3 NC_003387.1 + 34274 0.67 0.768755
Target:  5'- gUCGgGCgUCACgguGCGCGCGUacacGUGGCu -3'
miRNA:   3'- -GGCgCGaAGUG---CGCGUGCAau--CACUG- -5'
12800 3' -53.3 NC_003387.1 + 21522 0.67 0.768755
Target:  5'- aCGCGaUUCAgGCGCGCGUcgcGUucGACg -3'
miRNA:   3'- gGCGCgAAGUgCGCGUGCAau-CA--CUG- -5'
12800 3' -53.3 NC_003387.1 + 14438 0.67 0.747979
Target:  5'- cCUGgGCUcguUCACGCGCACGcaugGGUuccguuGGCu -3'
miRNA:   3'- -GGCgCGA---AGUGCGCGUGCaa--UCA------CUG- -5'
12800 3' -53.3 NC_003387.1 + 39912 0.67 0.747979
Target:  5'- gCCGCcCUugacgUCACGUGCACGUgauccauGUGGu -3'
miRNA:   3'- -GGCGcGA-----AGUGCGCGUGCAau-----CACUg -5'
12800 3' -53.3 NC_003387.1 + 29877 0.67 0.737404
Target:  5'- gUGCGCcUUGCGCGCcgaucGCGUUGGcGAUc -3'
miRNA:   3'- gGCGCGaAGUGCGCG-----UGCAAUCaCUG- -5'
12800 3' -53.3 NC_003387.1 + 30942 0.68 0.726722
Target:  5'- gCCGCGgUcaacuugagCGCGaacaGCGCGUcGGUGGCg -3'
miRNA:   3'- -GGCGCgAa--------GUGCg---CGUGCAaUCACUG- -5'
12800 3' -53.3 NC_003387.1 + 35464 0.68 0.725648
Target:  5'- gCGCGCagUC-CGCGaggugacCGCGUgAGUGACa -3'
miRNA:   3'- gGCGCGa-AGuGCGC-------GUGCAaUCACUG- -5'
12800 3' -53.3 NC_003387.1 + 38792 0.68 0.703987
Target:  5'- aCCGCGCUUCAcCGCcuCACauagauagaaguuGUUAGcUGGCu -3'
miRNA:   3'- -GGCGCGAAGU-GCGc-GUG-------------CAAUC-ACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.