miRNA display CGI


Results 41 - 60 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12800 5' -59.7 NC_003387.1 + 50171 0.67 0.426558
Target:  5'- aCGCCACCgGCgAGUUcauccugcGCGaCCGGgacgGCa -3'
miRNA:   3'- gGCGGUGG-CGgUCAA--------UGC-GGCCa---CGc -5'
12800 5' -59.7 NC_003387.1 + 20747 0.67 0.426558
Target:  5'- -aGUCAuCCGCCAGUgacgaccgaccuUGCgGCCGGggaUGCGa -3'
miRNA:   3'- ggCGGU-GGCGGUCA------------AUG-CGGCC---ACGC- -5'
12800 5' -59.7 NC_003387.1 + 26827 0.67 0.426558
Target:  5'- -aGCgCGCCGCCcuggACGCCGGggaGCa -3'
miRNA:   3'- ggCG-GUGGCGGucaaUGCGGCCa--CGc -5'
12800 5' -59.7 NC_003387.1 + 34499 0.67 0.426558
Target:  5'- cCCGCgGgCGaCCAGgu-CGCCGGUcgucGCGu -3'
miRNA:   3'- -GGCGgUgGC-GGUCaauGCGGCCA----CGC- -5'
12800 5' -59.7 NC_003387.1 + 41150 0.67 0.426558
Target:  5'- aCgGCCGCUGCgAGUgucagggcgagUGCgGCCGGUcGCa -3'
miRNA:   3'- -GgCGGUGGCGgUCA-----------AUG-CGGCCA-CGc -5'
12800 5' -59.7 NC_003387.1 + 14054 0.67 0.426558
Target:  5'- aCCGCCGUCGagguaCCAGUgcggauugaUGCGCCGGaacUGCa -3'
miRNA:   3'- -GGCGGUGGC-----GGUCA---------AUGCGGCC---ACGc -5'
12800 5' -59.7 NC_003387.1 + 12388 0.67 0.425639
Target:  5'- uCUGCCGCUGCUgcagGCGaucaacuCCGGUGCGc -3'
miRNA:   3'- -GGCGGUGGCGGucaaUGC-------GGCCACGC- -5'
12800 5' -59.7 NC_003387.1 + 26925 0.67 0.42106
Target:  5'- gCCGCCACCgaggccgccgagcgGCCgagaaugucgagcgGGU--UGCCGGUGCc -3'
miRNA:   3'- -GGCGGUGG--------------CGG--------------UCAauGCGGCCACGc -5'
12800 5' -59.7 NC_003387.1 + 25483 0.67 0.420148
Target:  5'- gCCGCCucgACCgcgcgugucagcucgGCCGGgucgaccgcagacUUGCGCCGGuUGCGc -3'
miRNA:   3'- -GGCGG---UGG---------------CGGUC-------------AAUGCGGCC-ACGC- -5'
12800 5' -59.7 NC_003387.1 + 13641 0.67 0.417418
Target:  5'- cCCgGCCACCGUCGGcgGCGgCuCGGUcGCc -3'
miRNA:   3'- -GG-CGGUGGCGGUCaaUGC-G-GCCA-CGc -5'
12800 5' -59.7 NC_003387.1 + 9850 0.67 0.417418
Target:  5'- uUCGCCucGCCGCCGGgcAC-CgCGGUGUu -3'
miRNA:   3'- -GGCGG--UGGCGGUCaaUGcG-GCCACGc -5'
12800 5' -59.7 NC_003387.1 + 11542 0.67 0.417418
Target:  5'- aCGCCGCCGaaaCGG-UGCGaCCGGccGCa -3'
miRNA:   3'- gGCGGUGGCg--GUCaAUGC-GGCCa-CGc -5'
12800 5' -59.7 NC_003387.1 + 29599 0.67 0.417418
Target:  5'- aCCGUUGCCGgUgagGGUcGCGCCGG-GCGc -3'
miRNA:   3'- -GGCGGUGGCgG---UCAaUGCGGCCaCGC- -5'
12800 5' -59.7 NC_003387.1 + 25072 0.67 0.4147
Target:  5'- aCUGCCGCCGCC-GUUgacccacgagucgaACGCCagccggucGGUGUc -3'
miRNA:   3'- -GGCGGUGGCGGuCAA--------------UGCGG--------CCACGc -5'
12800 5' -59.7 NC_003387.1 + 51355 0.68 0.408399
Target:  5'- gCGCCACUGCgAGcgguCGUCGGggucgGCGu -3'
miRNA:   3'- gGCGGUGGCGgUCaau-GCGGCCa----CGC- -5'
12800 5' -59.7 NC_003387.1 + 9571 0.68 0.408399
Target:  5'- uUGUCGCCGCCGa--ACGUgCGGUGCa -3'
miRNA:   3'- gGCGGUGGCGGUcaaUGCG-GCCACGc -5'
12800 5' -59.7 NC_003387.1 + 33769 0.68 0.399503
Target:  5'- gCGgCGCCGCgagCGGUUugGCCcggcuGGUGCc -3'
miRNA:   3'- gGCgGUGGCG---GUCAAugCGG-----CCACGc -5'
12800 5' -59.7 NC_003387.1 + 19889 0.68 0.399503
Target:  5'- aCCGCC-CCGCCc----CG-CGGUGCGg -3'
miRNA:   3'- -GGCGGuGGCGGucaauGCgGCCACGC- -5'
12800 5' -59.7 NC_003387.1 + 22066 0.68 0.390731
Target:  5'- aCCGgCACCGUUGGcgACGgCGGUaGCGc -3'
miRNA:   3'- -GGCgGUGGCGGUCaaUGCgGCCA-CGC- -5'
12800 5' -59.7 NC_003387.1 + 14928 0.68 0.390731
Target:  5'- gCUGCgACCGCgGGUgcUGCGCCcaGGcGCGc -3'
miRNA:   3'- -GGCGgUGGCGgUCA--AUGCGG--CCaCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.