miRNA display CGI


Results 41 - 60 of 127 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12802 5' -55.6 NC_003387.1 + 47307 0.67 0.610611
Target:  5'- aCGCCGCAGGCuGCAAcgcuUGC-GGCGUu-- -3'
miRNA:   3'- -GUGGCGUUCG-UGUU----ACGuCCGCGcuc -5'
12802 5' -55.6 NC_003387.1 + 46707 0.67 0.599479
Target:  5'- uGCCGCuGGaCGCcaaGCAGGCggGCGAGu -3'
miRNA:   3'- gUGGCGuUC-GUGuuaCGUCCG--CGCUC- -5'
12802 5' -55.6 NC_003387.1 + 35208 0.67 0.599479
Target:  5'- aGCCGCu-GCGC-AUGCuGGC-CGAGc -3'
miRNA:   3'- gUGGCGuuCGUGuUACGuCCGcGCUC- -5'
12802 5' -55.6 NC_003387.1 + 7356 0.67 0.599479
Target:  5'- gUACCGCAccGGCAUggUuGCggucgaaauGGGCaGCGAGc -3'
miRNA:   3'- -GUGGCGU--UCGUGuuA-CG---------UCCG-CGCUC- -5'
12802 5' -55.6 NC_003387.1 + 40453 0.67 0.599479
Target:  5'- gGCCGCcGGuCGC----CAGGCGCGGGa -3'
miRNA:   3'- gUGGCGuUC-GUGuuacGUCCGCGCUC- -5'
12802 5' -55.6 NC_003387.1 + 11086 0.67 0.588375
Target:  5'- gUACCGC-AGCGCcuuaGCuuGGGCGCGGu -3'
miRNA:   3'- -GUGGCGuUCGUGuua-CG--UCCGCGCUc -5'
12802 5' -55.6 NC_003387.1 + 3300 0.67 0.588375
Target:  5'- gGCCGCcgacucGGGCGCcgaGGUGCuguGGCGUGAc -3'
miRNA:   3'- gUGGCG------UUCGUG---UUACGu--CCGCGCUc -5'
12802 5' -55.6 NC_003387.1 + 6939 0.67 0.588375
Target:  5'- uCAUCGCGgccuGCGCAGcggcggGCAGGCGCc-- -3'
miRNA:   3'- -GUGGCGUu---CGUGUUa-----CGUCCGCGcuc -5'
12802 5' -55.6 NC_003387.1 + 37317 0.67 0.57731
Target:  5'- cCACCGCcAGUuacgcCGGUGCGGGUaCGGGu -3'
miRNA:   3'- -GUGGCGuUCGu----GUUACGUCCGcGCUC- -5'
12802 5' -55.6 NC_003387.1 + 35407 0.67 0.57731
Target:  5'- cCACCGCAGGUcaGCGGUGUgauuGGCG-GAu -3'
miRNA:   3'- -GUGGCGUUCG--UGUUACGu---CCGCgCUc -5'
12802 5' -55.6 NC_003387.1 + 48156 0.67 0.57731
Target:  5'- cCACCGaggcccGCGCGGUcgcGCAGGCGCa-- -3'
miRNA:   3'- -GUGGCguu---CGUGUUA---CGUCCGCGcuc -5'
12802 5' -55.6 NC_003387.1 + 14091 0.67 0.57731
Target:  5'- aACUGCAgcgccAGCGCGGccUGCGGGC-CGAa -3'
miRNA:   3'- gUGGCGU-----UCGUGUU--ACGUCCGcGCUc -5'
12802 5' -55.6 NC_003387.1 + 40605 0.67 0.57731
Target:  5'- aCACCGCAuuucgaGGCGgGccGguGGCGUGGu -3'
miRNA:   3'- -GUGGCGU------UCGUgUuaCguCCGCGCUc -5'
12802 5' -55.6 NC_003387.1 + 45116 0.67 0.57731
Target:  5'- aCGCCGCGGuGUACGAgGUgacgcauuucgAGGCGCGGc -3'
miRNA:   3'- -GUGGCGUU-CGUGUUaCG-----------UCCGCGCUc -5'
12802 5' -55.6 NC_003387.1 + 5261 0.67 0.57731
Target:  5'- gCugUGCGGGCGuaccUGCAGGCGCa-- -3'
miRNA:   3'- -GugGCGUUCGUguu-ACGUCCGCGcuc -5'
12802 5' -55.6 NC_003387.1 + 15375 0.67 0.566291
Target:  5'- uGCCGCAgauAGCGCAGcccGC-GGCGgGGGc -3'
miRNA:   3'- gUGGCGU---UCGUGUUa--CGuCCGCgCUC- -5'
12802 5' -55.6 NC_003387.1 + 9209 0.67 0.566291
Target:  5'- gACCgGCAccccGCGCGcuuuccugGUGgGGGCGCGGGg -3'
miRNA:   3'- gUGG-CGUu---CGUGU--------UACgUCCGCGCUC- -5'
12802 5' -55.6 NC_003387.1 + 14162 0.67 0.566291
Target:  5'- gCACCucgcCGGGC-CGGgccGCGGGCGUGAGg -3'
miRNA:   3'- -GUGGc---GUUCGuGUUa--CGUCCGCGCUC- -5'
12802 5' -55.6 NC_003387.1 + 15438 0.67 0.566291
Target:  5'- gCGCCGaCGAGCGCGc--CAGGCGCc-- -3'
miRNA:   3'- -GUGGC-GUUCGUGUuacGUCCGCGcuc -5'
12802 5' -55.6 NC_003387.1 + 32516 0.67 0.565192
Target:  5'- cCGCUGCGuGCACGcccggccGUGCgAGGCGCa-- -3'
miRNA:   3'- -GUGGCGUuCGUGU-------UACG-UCCGCGcuc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.