miRNA display CGI


Results 21 - 40 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12802 5' -55.6 NC_003387.1 + 8446 0.7 0.401965
Target:  5'- aCACgGCGAGC-CAccGCGcGGCGCGGu -3'
miRNA:   3'- -GUGgCGUUCGuGUuaCGU-CCGCGCUc -5'
12802 5' -55.6 NC_003387.1 + 9013 0.74 0.225741
Target:  5'- cCGCCGuCGAGCACcugGCGGGCGCc-- -3'
miRNA:   3'- -GUGGC-GUUCGUGuuaCGUCCGCGcuc -5'
12802 5' -55.6 NC_003387.1 + 9209 0.67 0.566291
Target:  5'- gACCgGCAccccGCGCGcuuuccugGUGgGGGCGCGGGg -3'
miRNA:   3'- gUGG-CGUu---CGUGU--------UACgUCCGCGCUC- -5'
12802 5' -55.6 NC_003387.1 + 9424 0.78 0.119552
Target:  5'- gGCCGaCGAGUACGAcGCGGGCGcCGAGc -3'
miRNA:   3'- gUGGC-GUUCGUGUUaCGUCCGC-GCUC- -5'
12802 5' -55.6 NC_003387.1 + 10036 0.66 0.644082
Target:  5'- aGCCG-AAGCGCGccGaGGGCGCGGu -3'
miRNA:   3'- gUGGCgUUCGUGUuaCgUCCGCGCUc -5'
12802 5' -55.6 NC_003387.1 + 10114 0.66 0.655231
Target:  5'- uGCgCGCuGAGCGCGAaaaGCGuuGGCGCGAa -3'
miRNA:   3'- gUG-GCG-UUCGUGUUa--CGU--CCGCGCUc -5'
12802 5' -55.6 NC_003387.1 + 10918 0.68 0.512173
Target:  5'- gCGCUGCAGGaCAUggUcGCgcaGGGCGCGGu -3'
miRNA:   3'- -GUGGCGUUC-GUGuuA-CG---UCCGCGCUc -5'
12802 5' -55.6 NC_003387.1 + 11086 0.67 0.588375
Target:  5'- gUACCGC-AGCGCcuuaGCuuGGGCGCGGu -3'
miRNA:   3'- -GUGGCGuUCGUGuua-CG--UCCGCGCUc -5'
12802 5' -55.6 NC_003387.1 + 11195 0.71 0.348541
Target:  5'- gGCCaaGGGCAUgucggacaaGAUGCAGGCGUGGGc -3'
miRNA:   3'- gUGGcgUUCGUG---------UUACGUCCGCGCUC- -5'
12802 5' -55.6 NC_003387.1 + 11935 0.68 0.512173
Target:  5'- gGCUGCGAGCGCGGgaucuugGUcgAGGCGCa-- -3'
miRNA:   3'- gUGGCGUUCGUGUUa------CG--UCCGCGcuc -5'
12802 5' -55.6 NC_003387.1 + 13158 0.66 0.666357
Target:  5'- gCACCGCGuGCAgAagGCcGaGCGCGAc -3'
miRNA:   3'- -GUGGCGUuCGUgUuaCGuC-CGCGCUc -5'
12802 5' -55.6 NC_003387.1 + 14091 0.67 0.57731
Target:  5'- aACUGCAgcgccAGCGCGGccUGCGGGC-CGAa -3'
miRNA:   3'- gUGGCGU-----UCGUGUU--ACGUCCGcGCUc -5'
12802 5' -55.6 NC_003387.1 + 14162 0.67 0.566291
Target:  5'- gCACCucgcCGGGC-CGGgccGCGGGCGUGAGg -3'
miRNA:   3'- -GUGGc---GUUCGuGUUa--CGUCCGCGCUC- -5'
12802 5' -55.6 NC_003387.1 + 14646 0.67 0.555327
Target:  5'- gGCCGCcgcGCACAGUGaCGcGGCGCu-- -3'
miRNA:   3'- gUGGCGuu-CGUGUUAC-GU-CCGCGcuc -5'
12802 5' -55.6 NC_003387.1 + 14933 0.68 0.501595
Target:  5'- gACCGCGGGUGCugcgccCAGGCGCGc- -3'
miRNA:   3'- gUGGCGUUCGUGuuac--GUCCGCGCuc -5'
12802 5' -55.6 NC_003387.1 + 15094 0.69 0.491114
Target:  5'- uCACUGCGgcGGCgauuaccucgGCAGUGC-GGUGCGGGu -3'
miRNA:   3'- -GUGGCGU--UCG----------UGUUACGuCCGCGCUC- -5'
12802 5' -55.6 NC_003387.1 + 15375 0.67 0.566291
Target:  5'- uGCCGCAgauAGCGCAGcccGC-GGCGgGGGc -3'
miRNA:   3'- gUGGCGU---UCGUGUUa--CGuCCGCgCUC- -5'
12802 5' -55.6 NC_003387.1 + 15438 0.67 0.566291
Target:  5'- gCGCCGaCGAGCGCGc--CAGGCGCc-- -3'
miRNA:   3'- -GUGGC-GUUCGUGUuacGUCCGCGcuc -5'
12802 5' -55.6 NC_003387.1 + 15982 0.66 0.632922
Target:  5'- aCGCC-CAGGCGCuc-GCAgacGGCGuCGAGg -3'
miRNA:   3'- -GUGGcGUUCGUGuuaCGU---CCGC-GCUC- -5'
12802 5' -55.6 NC_003387.1 + 17123 0.66 0.659684
Target:  5'- gGCCGUAGGCGaucgcuGUGUcgaccagcucggccaGGGCGcCGAGg -3'
miRNA:   3'- gUGGCGUUCGUgu----UACG---------------UCCGC-GCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.