miRNA display CGI


Results 1 - 20 of 127 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12802 5' -55.6 NC_003387.1 + 77 0.66 0.677451
Target:  5'- gCGCCGCGGGCGuu-UGCuGGCuCGAc -3'
miRNA:   3'- -GUGGCGUUCGUguuACGuCCGcGCUc -5'
12802 5' -55.6 NC_003387.1 + 457 0.71 0.374608
Target:  5'- cCGCCGCGgcGGC-CGAcgGCGaccGGCGCGAGc -3'
miRNA:   3'- -GUGGCGU--UCGuGUUa-CGU---CCGCGCUC- -5'
12802 5' -55.6 NC_003387.1 + 1280 0.66 0.676343
Target:  5'- gGCUGCGcggcguucgaccGGCGCAGUucgaggcggcgccGCAGGCGCu-- -3'
miRNA:   3'- gUGGCGU------------UCGUGUUA-------------CGUCCGCGcuc -5'
12802 5' -55.6 NC_003387.1 + 2899 0.68 0.501595
Target:  5'- uCGCuCGcCGGGCGCg--GCAGGCcGCGGGc -3'
miRNA:   3'- -GUG-GC-GUUCGUGuuaCGUCCG-CGCUC- -5'
12802 5' -55.6 NC_003387.1 + 2955 0.66 0.677451
Target:  5'- cCACCGCAGguaacGCGCAuggGCcucgcucgGGGCcucGCGAGg -3'
miRNA:   3'- -GUGGCGUU-----CGUGUua-CG--------UCCG---CGCUC- -5'
12802 5' -55.6 NC_003387.1 + 3300 0.67 0.588375
Target:  5'- gGCCGCcgacucGGGCGCcgaGGUGCuguGGCGUGAc -3'
miRNA:   3'- gUGGCG------UUCGUG---UUACGu--CCGCGCUc -5'
12802 5' -55.6 NC_003387.1 + 3564 0.69 0.477644
Target:  5'- gACCGCcuGCGCGcugguGUGCaccgacacguguacAGGCGCGAc -3'
miRNA:   3'- gUGGCGuuCGUGU-----UACG--------------UCCGCGCUc -5'
12802 5' -55.6 NC_003387.1 + 3812 0.76 0.174031
Target:  5'- aCACCGCAAGCGCGAcaacgaucgucaggGC-GGCGCGGu -3'
miRNA:   3'- -GUGGCGUUCGUGUUa-------------CGuCCGCGCUc -5'
12802 5' -55.6 NC_003387.1 + 4005 0.66 0.648543
Target:  5'- -gUCGCGGcGCACGGUGCucgacaacgccaaGCGCGAGg -3'
miRNA:   3'- guGGCGUU-CGUGUUACGuc-----------CGCGCUC- -5'
12802 5' -55.6 NC_003387.1 + 4261 0.71 0.348541
Target:  5'- aCGCCGCAAGagauuucgcggGCGAUGgAGGCcGCGGGc -3'
miRNA:   3'- -GUGGCGUUCg----------UGUUACgUCCG-CGCUC- -5'
12802 5' -55.6 NC_003387.1 + 4528 0.69 0.450269
Target:  5'- cCGCCGCc-GC-CGGUGCGGGCaccuuGCGGGc -3'
miRNA:   3'- -GUGGCGuuCGuGUUACGUCCG-----CGCUC- -5'
12802 5' -55.6 NC_003387.1 + 4626 0.73 0.271224
Target:  5'- cCACCGCGGGCGCAGcgGCAGcGCcacccguCGAGg -3'
miRNA:   3'- -GUGGCGUUCGUGUUa-CGUC-CGc------GCUC- -5'
12802 5' -55.6 NC_003387.1 + 5018 0.69 0.460309
Target:  5'- gCACgGCAGGCucACGAggGCGGcgcuGCGCGAGu -3'
miRNA:   3'- -GUGgCGUUCG--UGUUa-CGUC----CGCGCUC- -5'
12802 5' -55.6 NC_003387.1 + 5261 0.67 0.57731
Target:  5'- gCugUGCGGGCGuaccUGCAGGCGCa-- -3'
miRNA:   3'- -GugGCGUUCGUguu-ACGUCCGCGcuc -5'
12802 5' -55.6 NC_003387.1 + 5412 0.67 0.610611
Target:  5'- aCGCCGCAAGCguuGCAGccUGC-GGCGUu-- -3'
miRNA:   3'- -GUGGCGUUCG---UGUU--ACGuCCGCGcuc -5'
12802 5' -55.6 NC_003387.1 + 6939 0.67 0.588375
Target:  5'- uCAUCGCGgccuGCGCAGcggcggGCAGGCGCc-- -3'
miRNA:   3'- -GUGGCGUu---CGUGUUa-----CGUCCGCGcuc -5'
12802 5' -55.6 NC_003387.1 + 7356 0.67 0.599479
Target:  5'- gUACCGCAccGGCAUggUuGCggucgaaauGGGCaGCGAGc -3'
miRNA:   3'- -GUGGCGU--UCGUGuuA-CG---------UCCG-CGCUC- -5'
12802 5' -55.6 NC_003387.1 + 7773 0.73 0.257521
Target:  5'- gCACCGCAAGaucCGCAagcugcccgagGUGCAGGC-CGAGc -3'
miRNA:   3'- -GUGGCGUUC---GUGU-----------UACGUCCGcGCUC- -5'
12802 5' -55.6 NC_003387.1 + 8310 0.69 0.450269
Target:  5'- gCAUCGCGAGCACAGcGuCAGccGCgGCGAGc -3'
miRNA:   3'- -GUGGCGUUCGUGUUaC-GUC--CG-CGCUC- -5'
12802 5' -55.6 NC_003387.1 + 8358 0.66 0.677451
Target:  5'- uGCCGCuguucGGCA---UGCAGGcCGCGGu -3'
miRNA:   3'- gUGGCGu----UCGUguuACGUCC-GCGCUc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.