Results 1 - 20 of 127 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12802 | 5' | -55.6 | NC_003387.1 | + | 77 | 0.66 | 0.677451 |
Target: 5'- gCGCCGCGGGCGuu-UGCuGGCuCGAc -3' miRNA: 3'- -GUGGCGUUCGUguuACGuCCGcGCUc -5' |
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12802 | 5' | -55.6 | NC_003387.1 | + | 15982 | 0.66 | 0.632922 |
Target: 5'- aCGCC-CAGGCGCuc-GCAgacGGCGuCGAGg -3' miRNA: 3'- -GUGGcGUUCGUGuuaCGU---CCGC-GCUC- -5' |
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12802 | 5' | -55.6 | NC_003387.1 | + | 43763 | 0.66 | 0.621762 |
Target: 5'- uGCUGUugauGAGCACcuucAUGCGGGCGCc-- -3' miRNA: 3'- gUGGCG----UUCGUGu---UACGUCCGCGcuc -5' |
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12802 | 5' | -55.6 | NC_003387.1 | + | 22070 | 0.66 | 0.621762 |
Target: 5'- gCACCGUuGGCgACGGcgGUAGcGCGUGGGg -3' miRNA: 3'- -GUGGCGuUCG-UGUUa-CGUC-CGCGCUC- -5' |
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12802 | 5' | -55.6 | NC_003387.1 | + | 27176 | 0.66 | 0.621762 |
Target: 5'- uGCUGCcccucGGCgu-GUGguGGCGCGAGc -3' miRNA: 3'- gUGGCGu----UCGuguUACguCCGCGCUC- -5' |
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12802 | 5' | -55.6 | NC_003387.1 | + | 37135 | 0.66 | 0.642967 |
Target: 5'- gGCCGUgaugguuGGGCACucgcuggGCGGGCGCa-- -3' miRNA: 3'- gUGGCG-------UUCGUGuua----CGUCCGCGcuc -5' |
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12802 | 5' | -55.6 | NC_003387.1 | + | 47968 | 0.66 | 0.644082 |
Target: 5'- gCACCGCGAGCugGGcgGCAacggcaaacGGUGCuucGAGc -3' miRNA: 3'- -GUGGCGUUCGugUUa-CGU---------CCGCG---CUC- -5' |
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12802 | 5' | -55.6 | NC_003387.1 | + | 10036 | 0.66 | 0.644082 |
Target: 5'- aGCCG-AAGCGCGccGaGGGCGCGGu -3' miRNA: 3'- gUGGCgUUCGUGUuaCgUCCGCGCUc -5' |
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12802 | 5' | -55.6 | NC_003387.1 | + | 41101 | 0.66 | 0.644082 |
Target: 5'- aGCCGCGAGC----UGCuGGCGCu-- -3' miRNA: 3'- gUGGCGUUCGuguuACGuCCGCGcuc -5' |
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12802 | 5' | -55.6 | NC_003387.1 | + | 39696 | 0.66 | 0.632922 |
Target: 5'- gUugCGC-AGCGacGUGCGGGCGCu-- -3' miRNA: 3'- -GugGCGuUCGUguUACGUCCGCGcuc -5' |
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12802 | 5' | -55.6 | NC_003387.1 | + | 27892 | 0.66 | 0.644082 |
Target: 5'- gGCCGCAgacAGCGCAcacGCGgccuugaccggcGGCGUGGGc -3' miRNA: 3'- gUGGCGU---UCGUGUua-CGU------------CCGCGCUC- -5' |
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12802 | 5' | -55.6 | NC_003387.1 | + | 40708 | 0.66 | 0.655231 |
Target: 5'- aCACCGCAuGCGCcGUGUcgaccAGGcCGCGc- -3' miRNA: 3'- -GUGGCGUuCGUGuUACG-----UCC-GCGCuc -5' |
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12802 | 5' | -55.6 | NC_003387.1 | + | 34390 | 0.66 | 0.677451 |
Target: 5'- gACCgGCGGGCACGAcggccacgccguUGcCGGGCGCc-- -3' miRNA: 3'- gUGG-CGUUCGUGUU------------AC-GUCCGCGcuc -5' |
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12802 | 5' | -55.6 | NC_003387.1 | + | 2955 | 0.66 | 0.677451 |
Target: 5'- cCACCGCAGguaacGCGCAuggGCcucgcucgGGGCcucGCGAGg -3' miRNA: 3'- -GUGGCGUU-----CGUGUua-CG--------UCCG---CGCUC- -5' |
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12802 | 5' | -55.6 | NC_003387.1 | + | 1280 | 0.66 | 0.676343 |
Target: 5'- gGCUGCGcggcguucgaccGGCGCAGUucgaggcggcgccGCAGGCGCu-- -3' miRNA: 3'- gUGGCGU------------UCGUGUUA-------------CGUCCGCGcuc -5' |
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12802 | 5' | -55.6 | NC_003387.1 | + | 19888 | 0.66 | 0.666357 |
Target: 5'- aACCGCcccGCcccGCGGUGCGGGCuGCGc- -3' miRNA: 3'- gUGGCGuu-CG---UGUUACGUCCG-CGCuc -5' |
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12802 | 5' | -55.6 | NC_003387.1 | + | 33546 | 0.66 | 0.666357 |
Target: 5'- uGCCGUuAGCgACcGUGCGGGcCGCGc- -3' miRNA: 3'- gUGGCGuUCG-UGuUACGUCC-GCGCuc -5' |
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12802 | 5' | -55.6 | NC_003387.1 | + | 34693 | 0.66 | 0.663022 |
Target: 5'- aCGCCGCcucGGGCACGcuguacagccgcggGUGCuuGuGCGCGAa -3' miRNA: 3'- -GUGGCG---UUCGUGU--------------UACGu-C-CGCGCUc -5' |
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12802 | 5' | -55.6 | NC_003387.1 | + | 17123 | 0.66 | 0.659684 |
Target: 5'- gGCCGUAGGCGaucgcuGUGUcgaccagcucggccaGGGCGcCGAGg -3' miRNA: 3'- gUGGCGUUCGUgu----UACG---------------UCCGC-GCUC- -5' |
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12802 | 5' | -55.6 | NC_003387.1 | + | 25693 | 0.66 | 0.655231 |
Target: 5'- cCGCCGCcucGCGaacaccCAAUGCAGcaaCGCGAGa -3' miRNA: 3'- -GUGGCGuu-CGU------GUUACGUCc--GCGCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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