miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12802 5' -55.6 NC_003387.1 + 36765 1.08 0.000878
Target:  5'- cCACCGCAAGCACAAUGCAGGCGCGAGu -3'
miRNA:   3'- -GUGGCGUUCGUGUUACGUCCGCGCUC- -5'
12802 5' -55.6 NC_003387.1 + 33394 0.79 0.109745
Target:  5'- cCGCCGCAGGCACAuu-CAcGCGCGAGg -3'
miRNA:   3'- -GUGGCGUUCGUGUuacGUcCGCGCUC- -5'
12802 5' -55.6 NC_003387.1 + 9424 0.78 0.119552
Target:  5'- gGCCGaCGAGUACGAcGCGGGCGcCGAGc -3'
miRNA:   3'- gUGGC-GUUCGUGUUaCGUCCGC-GCUC- -5'
12802 5' -55.6 NC_003387.1 + 52312 0.77 0.158406
Target:  5'- cCACCGCcAGCACAGccucGgGGGUGCGAGu -3'
miRNA:   3'- -GUGGCGuUCGUGUUa---CgUCCGCGCUC- -5'
12802 5' -55.6 NC_003387.1 + 3812 0.76 0.174031
Target:  5'- aCACCGCAAGCGCGAcaacgaucgucaggGC-GGCGCGGu -3'
miRNA:   3'- -GUGGCGUUCGUGUUa-------------CGuCCGCGCUc -5'
12802 5' -55.6 NC_003387.1 + 46955 0.75 0.218041
Target:  5'- cCGCgGCGAGCGCGgccgguuccgcuacAUGCGGGCGaCGAc -3'
miRNA:   3'- -GUGgCGUUCGUGU--------------UACGUCCGC-GCUc -5'
12802 5' -55.6 NC_003387.1 + 33188 0.74 0.225741
Target:  5'- cCGCCGCAugcggaucGCGCAGcGCAaGCGCGAGg -3'
miRNA:   3'- -GUGGCGUu-------CGUGUUaCGUcCGCGCUC- -5'
12802 5' -55.6 NC_003387.1 + 9013 0.74 0.225741
Target:  5'- cCGCCGuCGAGCACcugGCGGGCGCc-- -3'
miRNA:   3'- -GUGGC-GUUCGUGuuaCGUCCGCGcuc -5'
12802 5' -55.6 NC_003387.1 + 28874 0.74 0.250885
Target:  5'- gUACCGCGAGCgGCAcgGCGccgagucccGGCGCGGc -3'
miRNA:   3'- -GUGGCGUUCG-UGUuaCGU---------CCGCGCUc -5'
12802 5' -55.6 NC_003387.1 + 29632 0.74 0.250885
Target:  5'- gCACCGCAcGCGCGAc---GGCGCGAGu -3'
miRNA:   3'- -GUGGCGUuCGUGUUacguCCGCGCUC- -5'
12802 5' -55.6 NC_003387.1 + 7773 0.73 0.257521
Target:  5'- gCACCGCAAGaucCGCAagcugcccgagGUGCAGGC-CGAGc -3'
miRNA:   3'- -GUGGCGUUC---GUGU-----------UACGUCCGcGCUC- -5'
12802 5' -55.6 NC_003387.1 + 19451 0.73 0.264301
Target:  5'- gGCCGUgcGGGCGCGugucaGUGUGGGCGcCGAGg -3'
miRNA:   3'- gUGGCG--UUCGUGU-----UACGUCCGC-GCUC- -5'
12802 5' -55.6 NC_003387.1 + 4626 0.73 0.271224
Target:  5'- cCACCGCGGGCGCAGcgGCAGcGCcacccguCGAGg -3'
miRNA:   3'- -GUGGCGUUCGUGUUa-CGUC-CGc------GCUC- -5'
12802 5' -55.6 NC_003387.1 + 51576 0.73 0.278293
Target:  5'- gCACCGCGcauGCAC---GCAGGCGcCGAGc -3'
miRNA:   3'- -GUGGCGUu--CGUGuuaCGUCCGC-GCUC- -5'
12802 5' -55.6 NC_003387.1 + 19273 0.73 0.278293
Target:  5'- gGCCGCcuuGCGCGagGUGguGGCGCGcAGc -3'
miRNA:   3'- gUGGCGuu-CGUGU--UACguCCGCGC-UC- -5'
12802 5' -55.6 NC_003387.1 + 29310 0.72 0.308034
Target:  5'- gACCGCGGGCACGAgcgcCAGGcCGCGc- -3'
miRNA:   3'- gUGGCGUUCGUGUUac--GUCC-GCGCuc -5'
12802 5' -55.6 NC_003387.1 + 21611 0.72 0.308034
Target:  5'- gCGCUGCugguGCACAugaucggGCAGGCGuCGAGc -3'
miRNA:   3'- -GUGGCGuu--CGUGUua-----CGUCCGC-GCUC- -5'
12802 5' -55.6 NC_003387.1 + 26283 0.72 0.308034
Target:  5'- gACCGCAAcGuCGCAAUGCucGGCGUGGc -3'
miRNA:   3'- gUGGCGUU-C-GUGUUACGu-CCGCGCUc -5'
12802 5' -55.6 NC_003387.1 + 47390 0.72 0.308034
Target:  5'- aCACCGCAAGCGCGggGCAaccGGCcccgcccCGAGc -3'
miRNA:   3'- -GUGGCGUUCGUGUuaCGU---CCGc------GCUC- -5'
12802 5' -55.6 NC_003387.1 + 39436 0.72 0.323793
Target:  5'- gCGCCGCAAGCucgguaucGCGAaccuguacgaGCGGGCGCGGu -3'
miRNA:   3'- -GUGGCGUUCG--------UGUUa---------CGUCCGCGCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.