Results 1 - 20 of 37 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12803 | 3' | -57.7 | NC_003387.1 | + | 35760 | 1.07 | 0.000656 |
Target: 5'- cGCCAGGUGAAACGCCAGCACCGGGAUc -3' miRNA: 3'- -CGGUCCACUUUGCGGUCGUGGCCCUA- -5' |
|||||||
12803 | 3' | -57.7 | NC_003387.1 | + | 30368 | 0.76 | 0.125602 |
Target: 5'- cGCCGGGU---GCGCCugggccagccccaccGGCGCCGGGAg -3' miRNA: 3'- -CGGUCCAcuuUGCGG---------------UCGUGGCCCUa -5' |
|||||||
12803 | 3' | -57.7 | NC_003387.1 | + | 43714 | 0.76 | 0.135014 |
Target: 5'- cGCCAGGUGcucGACGgCGGCAUgCGGGAg -3' miRNA: 3'- -CGGUCCACu--UUGCgGUCGUG-GCCCUa -5' |
|||||||
12803 | 3' | -57.7 | NC_003387.1 | + | 30487 | 0.75 | 0.154958 |
Target: 5'- uGCCcguuauAGGUGAAAuUGCCGGgGCCGGGGc -3' miRNA: 3'- -CGG------UCCACUUU-GCGGUCgUGGCCCUa -5' |
|||||||
12803 | 3' | -57.7 | NC_003387.1 | + | 30247 | 0.75 | 0.154958 |
Target: 5'- gGCCGGGUcGucGGgGUCGGCGCCGGGGUc -3' miRNA: 3'- -CGGUCCA-Cu-UUgCGGUCGUGGCCCUA- -5' |
|||||||
12803 | 3' | -57.7 | NC_003387.1 | + | 45953 | 0.73 | 0.202983 |
Target: 5'- gGCCAGGuUGAucugguucuCGCCGGUGCCGaGGGUg -3' miRNA: 3'- -CGGUCC-ACUuu-------GCGGUCGUGGC-CCUA- -5' |
|||||||
12803 | 3' | -57.7 | NC_003387.1 | + | 3667 | 0.72 | 0.223804 |
Target: 5'- uGCCcGGUG-AGCGCCAGCagcgcaaccgucgaGCCGGuGAUg -3' miRNA: 3'- -CGGuCCACuUUGCGGUCG--------------UGGCC-CUA- -5' |
|||||||
12803 | 3' | -57.7 | NC_003387.1 | + | 37049 | 0.72 | 0.235798 |
Target: 5'- cGCCGGGauucaucaccugcgUGGgcAACGCCAGCAgCGGGu- -3' miRNA: 3'- -CGGUCC--------------ACU--UUGCGGUCGUgGCCCua -5' |
|||||||
12803 | 3' | -57.7 | NC_003387.1 | + | 50977 | 0.71 | 0.263409 |
Target: 5'- cGCCGGGcucaUGcuguCGaUCAGCACCGGGAUg -3' miRNA: 3'- -CGGUCC----ACuuu-GC-GGUCGUGGCCCUA- -5' |
|||||||
12803 | 3' | -57.7 | NC_003387.1 | + | 44408 | 0.71 | 0.263409 |
Target: 5'- gGCCGGGccguagUGAuGCGCC-GCGCCGGuGAUc -3' miRNA: 3'- -CGGUCC------ACUuUGCGGuCGUGGCC-CUA- -5' |
|||||||
12803 | 3' | -57.7 | NC_003387.1 | + | 24658 | 0.71 | 0.270196 |
Target: 5'- cGCgAGGU----CGCCAGCGCCGaGGGUg -3' miRNA: 3'- -CGgUCCAcuuuGCGGUCGUGGC-CCUA- -5' |
|||||||
12803 | 3' | -57.7 | NC_003387.1 | + | 50958 | 0.71 | 0.277122 |
Target: 5'- cGCCAGcGcGAAGCGCCcccgagccgauAGCGgCCGGGGg -3' miRNA: 3'- -CGGUC-CaCUUUGCGG-----------UCGU-GGCCCUa -5' |
|||||||
12803 | 3' | -57.7 | NC_003387.1 | + | 39099 | 0.7 | 0.329586 |
Target: 5'- gGCCGGGUuGAACucacccgguGCCAGCGCgGGGc- -3' miRNA: 3'- -CGGUCCAcUUUG---------CGGUCGUGgCCCua -5' |
|||||||
12803 | 3' | -57.7 | NC_003387.1 | + | 33063 | 0.7 | 0.345863 |
Target: 5'- aCCGGGUGc-GCGCCaAGCGCCGcGAg -3' miRNA: 3'- cGGUCCACuuUGCGG-UCGUGGCcCUa -5' |
|||||||
12803 | 3' | -57.7 | NC_003387.1 | + | 39218 | 0.69 | 0.354215 |
Target: 5'- gGUCGGGcagugGGAGCGgguaCCGGCGCCGGGc- -3' miRNA: 3'- -CGGUCCa----CUUUGC----GGUCGUGGCCCua -5' |
|||||||
12803 | 3' | -57.7 | NC_003387.1 | + | 22176 | 0.69 | 0.362708 |
Target: 5'- cCCAGGcgGggGCGgCGGUAUCGGGu- -3' miRNA: 3'- cGGUCCa-CuuUGCgGUCGUGGCCCua -5' |
|||||||
12803 | 3' | -57.7 | NC_003387.1 | + | 18697 | 0.69 | 0.389024 |
Target: 5'- aCCAGGUGcggguCGCgCAGCGCCaGGGc -3' miRNA: 3'- cGGUCCACuuu--GCG-GUCGUGGcCCUa -5' |
|||||||
12803 | 3' | -57.7 | NC_003387.1 | + | 41376 | 0.69 | 0.389024 |
Target: 5'- cGCCgAGcGUGAGGC-CgAGCGCCGGGc- -3' miRNA: 3'- -CGG-UC-CACUUUGcGgUCGUGGCCCua -5' |
|||||||
12803 | 3' | -57.7 | NC_003387.1 | + | 23815 | 0.68 | 0.397159 |
Target: 5'- cGCgCAGcagauacGUGAgGGCGCC-GCGCCGGGAc -3' miRNA: 3'- -CG-GUC-------CACU-UUGCGGuCGUGGCCCUa -5' |
|||||||
12803 | 3' | -57.7 | NC_003387.1 | + | 28671 | 0.68 | 0.416561 |
Target: 5'- cGCCAGGUGAAucUGCgAGCACaggccgagcgaCGGGu- -3' miRNA: 3'- -CGGUCCACUUu-GCGgUCGUG-----------GCCCua -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home